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Related papers: Molecular Docking with Gaussian Boson Sampling

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Docking is a crucial component in drug discovery aimed at predicting the binding conformation and affinity between small molecules and target proteins. ML-based docking has recently emerged as a prominent approach, outpacing traditional…

Biomolecules · Quantitative Biology 2024-06-11 Thomas Le Menestrel , Manuel Rivas

To facilitate rational molecular and materials design, this research proposes an integrated computational framework that combines stochastic simulation, ab initio quantum chemistry, and molecular docking. The suggested workflow allows…

Materials Science · Physics 2026-01-08 Md Rakibul Karim Akanda , Michael P. Richard

Gaussian boson sampling, a computational model that is widely believed to admit quantum supremacy, has already been experimentally demonstrated and is claimed to surpass the classical simulation capabilities of even the most powerful…

Quantum Physics · Physics 2023-11-17 Minzhao Liu , Changhun Oh , Junyu Liu , Liang Jiang , Yuri Alexeev

Energy evaluation using fast Fourier transforms enables sampling billions of putative complex structures and hence revolutionized rigid protein-protein docking. However, in current methods efficient acceleration is achieved only in either…

AI-powered drug discovery typically relies on the successful prediction of compound-protein interactions, which are pivotal for the evaluation of designed compound molecules in structure-based drug design and represent a core challenge in…

Biomolecules · Quantitative Biology 2025-04-22 Pingfei Zhu , Chenyang Zhao , Haishi Zhao , Bo Yang

Despite the great popularity of virtual screening of existing compound libraries, the search for new potential drug candidates also takes advantage of generative protocols, where new compound suggestions are enumerated using various…

Biomolecules · Quantitative Biology 2023-12-22 Tomasz Danel , Jan Łęski , Sabina Podlewska , Igor T. Podolak

Although the Schr{\"o}dinger and Heisenberg pictures are equivalent formulations of quantum mechanics, simulations performed choosing one over the other can greatly impact the computational resources required to solve a problem. Here we…

Quantum Physics · Physics 2024-02-27 Dario Cilluffo , Nicola Lorenzoni , Martin B. Plenio

Gaussian Boson Sampling (GBS) is a quantum computing concept based on drawing samples from a multimode nonclassical Gaussian state using photon-number resolving detectors. It was initially posed as a near-term approach aiming to achieve…

Quantum Physics · Physics 2022-06-22 S. Sempere-Llagostera , R. B. Patel , I. A. Walmsley , W. S. Kolthammer

Quantum advantage, benchmarking the computational power of quantum machines outperforming all classical computers in a specific task, represents a crucial milestone in developing quantum computers and has been driving different physical…

Boson sampling (BS) is a multimode linear optical problem that is expected to be intractable on classical computers. It was recently suggested that molecular vibronic spectroscopy (MVS) is computationally as complex as BS. In this review,…

Quantum Physics · Physics 2018-09-19 Seungbeom Chin , Joonsuk Huh

Identifying the boundary beyond which quantum machines provide a computational advantage over their classical counterparts is a crucial step in charting their usefulness. Gaussian Boson Sampling (GBS), in which photons are measured from a…

CXCR7, a G-protein-coupled chemokine receptor, has recently emerged as a key player in cancer progression, particularly in driving angiogenesis and metastasis. Despite its significance, currently, few effective inhibitors exist for…

Biomolecules · Quantitative Biology 2025-05-20 Belaguppa Manjunath Ashwin Desai , Merla Sudha , Suvarna Ghosh , Pronama Biswas

Quantum computing has gained a lot of attention recently, and scientists have seen potential applications in this field using quantum computing for Cryptography and Communication to Machine Learning and Healthcare. Protein folding has been…

Quantum Physics · Physics 2022-11-16 Hasan Mustafa , Sai Nandan Morapakula , Prateek Jain , Srinjoy Ganguly

Gaussian boson sampling (GBS) allows for a way to demonstrate quantum supremacy with the relatively modest experimental resources of squeezed light sources, linear optics, and photon detection. In a realistic experimental setting, numerous…

Quantum Physics · Physics 2022-03-09 Junheng Shi , Tim Byrnes

Biclustering is a problem in machine learning and data mining that seeks to group together rows and columns of a dataset according to certain criteria. In this work, we highlight the natural relation that quantum computing models like boson…

Quantum Physics · Physics 2024-05-30 Ajinkya Borle , Ameya Bhave

Boson sampling is a mathematical problem that is strongly believed to be intractable for classical computers, whereas passive linear interferometers can produce samples efficiently. So far, the problem remains a computational curiosity, and…

Quantum Physics · Physics 2019-07-04 Georgios M. Nikolopoulos , Thomas Brougham

In this work, we give a hybrid quantum-classical algorithm for solving electronic structure problems of molecules using only linear quantum optical systems. The variational ansatz we proposed is a hybrid of non-interacting Boson dynamics…

Information delivery using chemical molecules is an integral part of biology at multiple distance scales and has attracted recent interest in bioengineering and communication theory. Potential applications include cooperative networks with…

Information Theory · Computer Science 2017-09-05 Yansha Deng , Adam Noel , Weisi Guo , Arumugam Nallanathan , Maged Elkashlan

We investigate whether Gaussian Boson Sampling (GBS) can provide a computational advantage for solving the planted biclique problem, which is a graph problem widely believed to be classically hard when the planted structure is small.…

Quantum Physics · Physics 2025-11-10 Yu-Zhen Janice Chen , Laurent Massoulié , Don Towsley

The search for new, application-specific quantum computers designed to outperform any classical computer is driven by the ending of Moore's law and the quantum advantages potentially obtainable. Photonic networks are promising examples,…

Quantum Physics · Physics 2018-04-13 B. Opanchuk , L. Rosales-Zárate , M. D. Reid , P. D. Drummond
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