Related papers: Chemical Names Standardization using Neural Sequen…
A typical information extraction pipeline consists of token- or span-level classification models coupled with a series of pre- and post-processing scripts. In a production pipeline, requirements often change, with classes being added and…
There is an intuitive analogy of an organic chemist's understanding of a compound and a language speaker's understanding of a word. Consequently, it is possible to introduce the basic concepts and analyze potential impacts of linguistic…
Intelligently extracting and linking complex scientific information from unstructured text is a challenging endeavor particularly for those inexperienced with natural language processing. Here, we present a simple sequence-to-sequence…
For several decades, chemical knowledge has been published in written text, and there have been many attempts to make it accessible, for example, by transforming such natural language text to a structured format. Although the discovered…
Chemical patent documents describe a broad range of applications holding key reaction and compound information, such as chemical structure, reaction formulas, and molecular properties. These informational entities should be first identified…
This paper presents a proof-of-concept method for classifying chemical compounds directly from NMR data without doing structure elucidation. This can help to reduce time in finding good structure candidates, as in most cases matching must…
Chemical structure extraction from documents remains a hard problem due to both false positive identification of structures during segmentation and errors in the predicted structures. Current approaches rely on handcrafted rules and…
The automatic assignment of species information to the corresponding genes in a research article is a critically important step in the gene normalization task, whereby a gene mention is normalized and linked to a database record or…
Text normalization is an important enabling technology for several NLP tasks. Recently, neural-network-based approaches have outperformed well-established models in this task. However, in languages other than English, there has been little…
Complex structures are typical in machine learning. Tailoring learning algorithms for every structure requires an effort that may be saved by defining a generic learning procedure adaptive to any complex structure. In this paper, we propose…
Integrating an external language model into a sequence-to-sequence speech recognition system is non-trivial. Previous works utilize linear interpolation or a fusion network to integrate external language models. However, these approaches…
Civilizations have tried to make drinking water safe to consume for thousands of years. The process of determining water contaminants has evolved with the complexity of the contaminants due to pesticides and heavy metals. The routine…
We present a comparison of word-based and character-based sequence-to-sequence models for data-to-text natural language generation, which generate natural language descriptions for structured inputs. On the datasets of two recent generation…
A systematic review identifies and collates various clinical studies and compares data elements and results in order to provide an evidence based answer for a particular clinical question. The process is manual and involves lot of time. A…
Automatic summarisation is a popular approach to reduce a document to its main arguments. Recent research in the area has focused on neural approaches to summarisation, which can be very data-hungry. However, few large datasets exist and…
Normalization is an important database design method, in the course of the teaching of data modeling the understanding and applying of this method cause problems for students the most. For improving the efficiency of learning normalization…
Many database columns contain string or numerical data that conforms to a pattern, such as phone numbers, dates, addresses, product identifiers, and employee ids. These patterns are useful in a number of data processing applications,…
Curriculum learning has shown promising improvements in multiple domains by training machine learning models from easy samples to hard ones. Previous works which either design rules or train models for scoring the difficulty highly rely on…
A novel approach is presented for the solution of instantaneous chemical equilibrium problems. The chemical equilibrium can be considered, due to its intrinsically local character, as a mapping of the three-dimensional parameter space…
We define multilevel text normalization as sequence-to-sequence processing that transforms naturally noisy text into a sequence of normalized units of meaning (morphemes) in three steps: 1) writing normalization, 2) lemmatization, 3)…