Related papers: Chemical Names Standardization using Neural Sequen…
We present data augmentation techniques for process extraction tasks in scientific publications. We cast the process extraction task as a sequence labeling task where we identify all the entities in a sentence and label them according to…
Sequence labelling is the task of assigning categorical labels to a data sequence. In Natural Language Processing, sequence labelling can be applied to various fundamental problems, such as Part of Speech (POS) tagging, Named Entity…
The ability to cheaply train text classifiers is critical to their use in information retrieval, content analysis, natural language processing, and other tasks involving data which is partly or fully textual. An algorithm for sequential…
Named entity recognition (NER) is a widely studied task in natural language processing. Recently, a growing number of studies have focused on the nested NER. The span-based methods, considering the entity recognition as a span…
Compositional generalization is the ability to generalize systematically to a new data distribution by combining known components. Although humans seem to have a great ability to generalize compositionally, state-of-the-art neural models…
Data-driven approaches to sequence-to-sequence modelling have been successfully applied to short text summarization of news articles. Such models are typically trained on input-summary pairs consisting of only a single or a few sentences,…
The extraction of main content from web pages is an important task for numerous applications, ranging from usability aspects, like reader views for news articles in web browsers, to information retrieval or natural language processing.…
Disease name normalization is an important task in the medical domain. It classifies disease names written in various formats into standardized names, serving as a fundamental component in smart healthcare systems for various…
Natural language processing models have emerged that can generate usable software and automate a number of programming tasks with high fidelity. These tools have yet to have an impact on the chemistry community. Yet, our initial testing…
Text Categorization is the task of automatically sorting a set of documents into categories from a predefined set and Text Summarization is a brief and accurate representation of input text such that the output covers the most important…
Sequence-to-sequence learning with neural networks has become the de facto standard for sequence prediction tasks. This approach typically models the local distribution over the next word with a powerful neural network that can condition on…
The number of scientific journal articles and reports being published about energetic materials every year is growing exponentially, and therefore extracting relevant information and actionable insights from the latest research is becoming…
Deep shotgun sequencing and analysis of genomes, transcriptomes, amplified single-cell genomes, and metagenomes has enabled investigation of a wide range of organisms and ecosystems. However, sampling variation in short-read data sets and…
Complex chemical structures, like drugs, are usually defined by SMILES strings as a sequence of molecules and bonds. These SMILES strings are used in different complex machine learning-based drug-related research and representation works.…
In recent years, Large Language Models (LLMs) have achieved significant success in natural language processing (NLP) and various interdisciplinary areas. However, applying LLMs to chemistry is a complex task that requires specialized domain…
Although neural sequence-to-sequence models have been successfully applied to semantic parsing, they fail at compositional generalization, i.e., they are unable to systematically generalize to unseen compositions of seen components.…
Sequence-to-sequence transduction is the core problem in language processing applications as diverse as semantic parsing, machine translation, and instruction following. The neural network models that provide the dominant solution to these…
Finding the main product of a chemical reaction is one of the important problems of organic chemistry. This paper describes a method of applying a neural machine translation model to the prediction of organic chemical reactions. In order to…
Chemical named entity recognition (NER) models are used in many downstream tasks, from adverse drug reaction identification to pharmacoepidemiology. However, it is unknown whether these models work the same for everyone. Performance…
Text classification is one of the most widely studied tasks in natural language processing. Motivated by the principle of compositionality, large multilayer neural network models have been employed for this task in an attempt to effectively…