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Vanadium dioxide (VO2) is a popular candidate for electronic and optical switching applications due to its well-known semiconductor-metal transition. Its study is notoriously challenging due to the interplay of long and short range elastic…

Phosphorelays are a class of signaling mechanisms used by cells to respond to changes in their environment. Phosphorelays (of which two-component systems constitute a special case) are particularly abundant in prokaryotes and have been…

Molecular Networks · Quantitative Biology 2011-09-26 Michael Knudsen , Elisenda Feliu , Carsten Wiuf

Regulatory T cells (Treg) have recently been identified as playing a central role in allergy and during allergen-specific immunotherapy. We have extended our previous mathematical model describing the nonlinear dynamics of Th1-Th2…

Cell Behavior · Quantitative Biology 2010-03-05 Fridolin Gross , Gerhard Metzner , Ulrich Behn

Preliminary epidemiologic, phylogenetic and clinical findings suggest that several novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants have increased transmissibility and decreased efficacy of several existing…

On-chip optoelectronics is fundamental to modern telecommunication, yet the diffraction limit of light remains a major obstacle to the extreme miniaturization of photonic integrated circuits (PICs). Hyperbolic polaritons (HPs) $-$ hybrid…

Vanadium dioxide with metal-to-insulator transition (MIT) that is triggered by heat, current or light is a promising material for modern active THz/mid-IR metasurfaces and all-optical big data processing systems. Multilayer VO2-based active…

A finite Schottky barrier and large contact resistance between monolayer MoS2 and electrodes are the major bottlenecks in developing high-performance field-effect transistors (FETs) that hinder the study of intrinsic quantum behaviors such…

p27$^{Kip1}$ (p27) is an intrinsically disordered protein (IDP) that folds upon binding to cyclin-dependent kinase (Cdk)$/$cyclin complexes (e.g., Cdk2$/$cyclin A), inhibiting their catalytic activity and causing cell cycle arrest. However,…

Tropical climates provoke adaptations in skin pigmentation and in mechanisms controlling the volume, salt-content and pressure of body fluids. For many whose distant ancestors moved to temperate climes, these adaptations proved harmful:…

Tissues and Organs · Quantitative Biology 2020-08-07 Donald R. Forsdyke

Protein S (PS) is a notable anticoagulant implicated in both bleeding and thrombotic disorders, making it a promising drug target. Importantly, PS enhances the anticoagulant function of TFPI$\alpha$, likely circulating in the bloodstream…

The DevRS two component system of Mycobacterium tuberculosis is responsible for its dormancy in host and becomes operative under hypoxic condition. It is experimentally known that phosphorylated DevR controls the expression of several…

Molecular Networks · Quantitative Biology 2014-01-30 Arnab Bandyopadhyay , Soumi Biswas , Alok Kumar Maity , Suman K Banik

Since the epidemic began in November 2019, no viable medicine against SARS-CoV-2 has been discovered. The typical medication discovery strategy requires several years of rigorous research and development as well as a significant financial…

Biomolecules · Quantitative Biology 2021-06-11 Estari Mamidalaa , Rakesh Davella , Swapna Gurrapu , Munipally Praveen Kumar , Abhiav

Integrins are allosteric cell adhesion receptors that control many important processes, including cell migration, proliferation, and apoptosis. Ligand binding activates integrins by stabilizing an integrin conformation with separated…

Quantitative Methods · Quantitative Biology 2010-07-16 Federico Felizzi , Dagmar Iber

The bacterial SOS response is a cellular reaction to DNA damage, that, among other actions, triggers the expression of colicin - toxic bacteriocins in Escherichia coli that are released to kill close relatives competing for resources.…

Molecular Networks · Quantitative Biology 2018-05-08 Alexandra Götz , Matthias Lechner , Andreas Mader , Benedikt von Bronk , Erwin Frey , Madeleine Opitz

High-resolution volumetric computed tomography (CT) is essential for accurate diagnosis and treatment planning in thoracic diseases; however, it is limited by radiation dose and hardware costs. We present the Transformer Volumetric…

Release of $Ca^{2+}$ from endoplasmatic retriculum (ER) $Ca^{2+}$ stores causes stromal interaction molecules (STIM) in the ER membrane and ORAI proteins in the plasma membrane (PM) to interact and form the $Ca^{2+}$ release activated…

Biological Physics · Physics 2019-02-21 Barbara Schmidt , Dalia Alansary , Ivan Bogeski , Barbara A. Niemeyer , Heiko Rieger

The COVID-19 pandemic triggered by SARS-CoV-2 is a worldwide health disaster. Main protease is an attractive drug target among coronaviruses, due to its vital role in processing the polyproteins that are translated from the viral RNA. There…

Biomolecules · Quantitative Biology 2020-04-29 Estari Mamidala , Rakesh Davella , Swapna Gurrapu , Pujala Shivakrishna

In living matter, shape fluctuations induced by acto-myosin are usually studied in vitro via reconstituted gels, whose properties are controlled by changing the concentrations of actin, myosin and cross-linkers. Such an approach…

Biological Physics · Physics 2018-03-01 É. Fodor , V. Mehandia , J. Comelles , R. Thiagarajan , N. S. Gov , P. Visco , F. van Wijland , D. Riveline

Various theoretical studies have been carried out to infer relevant protein-protein interactions among pathogens and their hosts. Such studies are generally based on preferential attachment of bacteria / virus to their human receptor…

Molecular Networks · Quantitative Biology 2019-07-09 S. Chatterjee , B. S. Sanjeev

Electric and thermoelectric properties of strictly monolayer MoS$_2$ films, which are grown using a novel micro-cavity based CVD growth technique, have been studied under diverse environmental and annealing conditions. Resistance of a…

Mesoscale and Nanoscale Physics · Physics 2020-09-16 Swarup Deb , Pritam Bhattacharyya , Poulab Chakrabarti , Himadri Chakraborti , Kantimay Das Gupta , Alok Shukla , Subhabrata Dhar