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The mating pathway in \emph{Saccharomyces cerevisiae} is one of the best understood signal transduction pathways in eukaryotes. It transmits the mating signal from plasma membrane into the nucleus through the G-protein coupled receptor and…

Molecular Networks · Quantitative Biology 2009-11-13 Danying Shao , Wen Zheng , Wenjun Qiu , Qi Ouyang , Chao Tang

We propose a new deterministic methodology to predict RNA sequence and protein folding. Is stem enough for structure prediction? The main idea is to consider all possible stem formation in the given sequence. With the stem loop energy and…

Discrete Mathematics · Computer Science 2022-01-19 Mengyi Tang , Kumbit Hwang , Sung Ha Kang

Phagocytosis is the fundamental cellular process by which eukaryotic cells bind and engulf particles by their cell membrane. Particle engulfment involves particle recognition by cell-surface receptors, signaling and remodeling of the actin…

Cell Behavior · Quantitative Biology 2010-11-02 Sylvain Tollis , Anna E. Dart , George Tzircotis , Robert G. Endres

Fluorescent dyes are getting popularity for last few decades due to their extraordinary applications in cell imaging. We have discovered organic Beet root extracted fluorescent (BREF) dye as an efficient pigment for effective cell imaging.…

Cell Behavior · Quantitative Biology 2017-10-25 Arpita Das , Debarati De , Ajay Ghosh , Madhuri Mandal Goswami

Knowledge of the gap function is important to understand the pairing mechanism for high-temperature ($T_\mathrm{c}$) superconductivity. However, Fourier transform scanning tunneling spectroscopy (FT STS) and angle-resolved photoemission…

Transient reflectivity spectroscopy is widely used to study ultrafast carrier- and phonon-dynamics in semiconductors. In their heterostructures, it is often not straightforward to distinguish contributions to the signal from the various…

Mesoscale and Nanoscale Physics · Physics 2022-02-09 Kunie Ishioka , Ethan Angerhoffer , Christopher J. Stanton , Gerson Mette , Kerstin Volz , Wolfgang Stolz , Ulrich Höfer

The characterization of interactions between autophagy modifiers (Atg8-family proteins) and their natural ligands (peptides and proteins) or small molecules is important for a detailed understanding of selective autophagy mechanisms and for…

Biomolecules · Quantitative Biology 2024-01-10 Martin P. Schwalm , Johannes Dopfer , Stefan Knapp , Vladimir V. Rogov

The semiconductor ReSe$_2$ is characterized by a strongly anisotropic optical absorption and is therefore promising as an optically active component in two-dimensional heterostructures. However, the underlying femtosecond dynamics of…

In the search for neutrinoless double beta decay, understanding and reducing backgrounds is crucial for success. An advance that could drive backgrounds to negligible levels would be the ability to efficiently detect the barium daughter in…

Instrumentation and Detectors · Physics 2019-09-12 N. K. Byrnes , A. A. Denisenko , F. W. Foss , B. J. P. Jones , A. D. McDonald , D. R. Nygren , P. Thapa , K. Woodruff

We use angle-resolved photoemission spectroscopy (ARPES) to investigate the electronic properties of the newly discovered iron-arsenic superconductor, Ba(1-x)K(x)Fe2As2 and non-supercondcuting BaFe2As2. Our study indicates that the Fermi…

Intracellular delivery of biomolecules remains a critical challenge in both basic cell biology and translational therapeutics. We introduce Programmable Acoustic Standing-wave Transfection (PAST), a microfluidic tool that leverages…

Biological Physics · Physics 2026-03-09 Subhas Nandy , Monica Manohar , Ashis K Sen

Tip-enhanced Raman spectroscopy (TERS) enables nanoscale chemical mapping of biological structures, providing high-resolution, high-signal-to-noise ratio imaging into molecular distribution and interactions beyond the capabilities of…

Fluorescence microscopy plays a vital role in understanding the subcellular structures of living cells. However, it requires considerable effort in sample preparation related to chemical fixation, staining, cost, and time. To reduce those…

Image and Video Processing · Electrical Eng. & Systems 2020-12-02 Thanh Nguyen , Vy Bui , Anh Thai , Van Lam , Christopher B. Raub , Lin-Ching Chang , George Nehmetallah

Many medical and biological protocols for analyzing individual biological cells involve morphological evaluation based on cell staining, designed to enhance imaging contrast and enable clinicians and biologists to differentiate between…

Optical fiber-based platforms are increasingly explored as compact, minimally invasive tools for integrated photonic functionalities in biomedical applications. Among these, the combination of plasmonic heating and optical sensing on a…

Integration of fiber optics may play a critical role in the development of quantum information processors based on trapped ions and atoms by enabling scalable collection and delivery of light and coupling trapped ions to optical…

Quantum Physics · Physics 2010-11-16 A. P. VanDevender , Y. Colombe , J. Amini , D. Leibfried , D. J. Wineland

Angle-resolved photoemission spectroscopy (ARPES) measures the single-particle excitations of a many-body quantum system with both energy and momentum resolution, providing detailed information about strongly interacting materials. ARPES is…

Molecular interactions are key to many chemical and biological processes like protein function. In many signaling processes they occur in sub-cellular areas displaying nanoscale organizations and involving molecular assemblies. The…

Steganalysis as a method to detect whether image contains se-cret message, is a crucial study avoiding the imperils from abus-ing steganography. The point of steganalysis is to detect the weak embedding signals which is hardly learned by…

Multimedia · Computer Science 2022-03-25 Hai Su , Meiyin Han , Junle Liang , Songsen Yu

Understanding cellular response to mechanical forces is immensely important for a plethora of biological processes. Focal adhesions are multi-molecular protein assemblies that connect the cell to the extracellular matrix and play a pivotal…

Biological Physics · Physics 2019-10-25 Rumi De
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