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For nearly a century, the initial reproduction number (R0) has been used as a one number summary to compare outbreaks of infectious disease, yet there is no `standard' estimator for R0. Difficulties in estimating R0 arise both from how a…

Populations and Evolution · Quantitative Biology 2020-03-25 Shannon Gallagher , Andersen Chang , William F. Eddy

Infectious disease is a leading threat to public health, economic stability, and other key social structures. Efforts to mitigate these impacts depend on accurate and timely monitoring to measure the risk and progress of disease.…

Social and Information Networks · Computer Science 2015-04-03 Nicholas Generous , Geoffrey Fairchild , Alina Deshpande , Sara Y. Del Valle , Reid Priedhorsky

Large quantities of social activity data, such as weekly web search volumes and the number of new infections with infectious diseases, reflect peoples' interests and activities. It is important to discover temporal patterns from such data…

Social and Information Networks · Computer Science 2025-05-02 Shingo Higashiguchi , Yasuko Matsubara , Koki Kawabata , Taichi Murayama , Yasushi Sakurai

Forecasting influenza like illnesses (ILI) has rapidly progressed in recent years from an art to a science with a plethora of data-driven methods. While these methods have achieved qualified success, their applicability is limited due to…

Machine Learning · Computer Science 2021-01-26 Alexander Rodríguez , Bijaya Adhikari , Naren Ramakrishnan , B. Aditya Prakash

So far, Google Trend data have been used for influenza surveillance in many European and American countries; however, there are few attempts to apply the low-cost surveillance method in Asian developing countries. To investigate the…

Computers and Society · Computer Science 2015-12-11 Xichuan Zhou , Qin Li , Han Zhao , Shengli Li , Lei Yu , Fang Tang , Shengdong Hu , Guojun Li , Yujie Feng

Most if not all on-line item-to-item recommendation systems rely on estimation of a distance like measure (rank) of similarity between items. For on-line recommendation systems, time sensitivity of this similarity measure is extremely…

Numerical Analysis · Mathematics 2023-02-06 Alexander Kushkuley , Joshua Correa

Absenteeism of elementary school children has been shown to be effective in the early detection of an incoming influenza epidemic within a given population. This paper introduces DESA, an R package designed to: 1) model an epidemic using…

Applications · Statistics 2026-03-11 Vinay Joshy , Zeny Feng , Lorna Deeth , Kayla Vanderkruk , Justin Slater

Information on social media spreads through an underlying diffusion network that connects people of common interests and opinions. This diffusion network often comprises multiple layers, each capturing the spreading dynamics of a certain…

Social and Information Networks · Computer Science 2024-10-08 Yan Xia , Ted Hsuan Yun Chen , Mikko Kivelä

Internet data has surfaced as a primary source for investigation of different aspects of human behavior. A crucial step in such studies is finding a suitable cohort (i.e., a set of users) that shares a common trait of interest to…

Information Retrieval · Computer Science 2018-05-16 Luca Soldaini , Elad Yom-Tov

Information diffusion, spreading of infectious diseases, and spreading of rumors are fundamental processes occurring in real-life networks. In many practical cases, one can observe when nodes become infected, but the underlying network,…

Social and Information Networks · Computer Science 2022-03-31 Liudmila Prokhorenkova , Alexey Tikhonov , Nelly Litvak

A pressing question resulting from global warming is how infectious diseases will be affected by climate change. Answering this question requires research into the effects of weather on the population dynamics of transmission and infection;…

Populations and Evolution · Quantitative Biology 2024-02-21 Laura Andrea Barrero Guevara , Sarah C Kramer , Tobias Kurth , Matthieu Domenech de Cellès

The networked structure of contacts shapes the spreading of epidemic processes. Recent advances on network theory have improved our understanding of the epidemic processes at large scale. The relevance of several considerations still needs…

Physics and Society · Physics 2019-02-21 Sergio Gómez , Alberto Fernández , Sandro Meloni , Alex Arenas

Being based on Web technologies, Linked Data is distributed and decentralised in its nature. Hence, for the purpose of finding relevant Linked Data on the Web, search indices play an important role. Also for avoiding network communication…

Databases · Computer Science 2016-03-22 Thomas Gottron

Over the last ten years, the US Centers for Disease Control and Prevention (CDC) has organized an annual influenza forecasting challenge with the motivation that accurate probabilistic forecasts could improve situational awareness and yield…

Machine Learning · Statistics 2024-07-30 Evan L. Ray , Yijin Wang , Russell D. Wolfinger , Nicholas G. Reich

The most frequent infectious diseases in humans - and those with the highest potential for rapid pandemic spread - are usually transmitted via droplets during close proximity interactions (CPIs). Despite the importance of this transmission…

The performance of data-driven prediction models depends on the availability of data samples for model training. A model that learns about dengue fever incidence in a population uses historical data from that corresponding location. Poor…

Machine Learning · Computer Science 2021-04-22 Tanvir Ferdousi , Lee W. Cohnstaedt , Caterina M. Scoglio

Accurate epidemic forecasting is critical for informing public health decisions and timely interventions. While Physics-Informed Neural Networks have shown promise in various scientific domains, their potential application to real-time…

Physics and Society · Physics 2026-05-20 Martina Rama , Gabriele Santin , Giulia Cencetti , Michele Tizzoni , Bruno Lepri

A central challenge in every field of biology is to use existing measurements to predict the outcomes of future experiments. In this work, we consider the wealth of antibody inhibition data against variants of the influenza virus. Due to…

Quantitative Methods · Quantitative Biology 2023-07-27 Tal Einav , Rong Ma

Short-time human travel behaviour can be described by a power law with respect to distance. We incorporate this information in space-time models for infectious disease surveillance data to better capture the dynamics of disease spread. Two…

Methodology · Statistics 2014-11-25 Sebastian Meyer , Leonhard Held

Early, reliable detection of disease outbreaks is a critical problem today. This paper reports an investigation of the use of causal Bayesian networks to model spatio-temporal patterns of a non-contagious disease (respiratory anthrax…

Applications · Statistics 2012-07-19 Gregory F. Cooper , Denver Dash , John Levander , Weng-Keen Wong , William Hogan , Michael Wagner