Related papers: On the Extremal Maximum Agreement Subtree Problem
For a set of graphs $\mathcal{F}$, the extremal number $ex(n;\mathcal{F})$ is the maximum number of edges in a graph of order $n$ not containing any subgraph isomorphic to some graph in $\mathcal{F}$. If $\mathcal{F}$ contains a graph on…
We study the asymptotic behavior af the number of cuts $X(T_n)$ needed to isolate the root in a rooted binary random tree $T_n$ with $n$ leaves. We focus on the case of subtrees of the Continuum Random Tree generated by uniform sampling of…
We consider spanning trees of $n$ points in convex position whose edges are pairwise non-crossing. Applying a flip to such a tree consists in adding an edge and removing another so that the result is still a non-crossing spanning tree.…
Given a rooted tree and a ranking of its leaves, what is the minimum number of inversions of the leaves that can be attained by ordering the tree? This variation of the problem of counting inversions in arrays originated in mathematical…
The mutational heterogeneity of tumours can be described with a tree representing the evolutionary history of the tumour. With noisy sequencing data there may be uncertainty in the inferred tree structure, while we may also wish to study…
The subtrees and BC-subtrees (subtrees where any two leaves are at even distance apart) have been extensively studied in recent years. Such structures, under special constraints on degrees, have applications in many fields. Through an…
The Rooted Maximum Leaf Outbranching problem consists in finding a spanning directed tree rooted at some prescribed vertex of a digraph with the maximum number of leaves. Its parameterized version asks if there exists such a tree with at…
A classical problem in phylogenetic tree analysis is to decide whether there is a phylogenetic tree $T$ that contains all information of a given collection $\cP$ of phylogenetic trees. If the answer is "yes" we say that $\cP$ is compatible…
Let $\mathcal {T}^{\Delta}_n$ denote the set of trees of order $n$, in which the degree of each vertex is bounded by some integer $\Delta$. Suppose that every tree in $\mathcal {T}^{\Delta}_n$ is equally likely. For any given subtree $H$,…
We provide an $\Omega(n\log n) $ lower bound and an $O(n^2)$ upper bound for the smallest size of rooted binary trees (a.k.a. phylogenetic tree shapes), which are universal for rooted binary trees with $n$ leaves, i.e., contain all of them…
A linear arrangement is a mapping $\pi$ from the $n$ vertices of a graph $G$ to $n$ distinct consecutive integers. Linear arrangements can be represented by drawing the vertices along a horizontal line and drawing the edges as semicircles…
We show that a tree of order $n$ has at most $O(5^{n/4})$ nonisomorphic subtrees, and that this bound is best possible. We also prove an analogous result for the number of nonisomorphic rooted subtrees of a rooted tree.
Sumner's universal tournament conjecture states that every $(2n-2)$-vertex tournament should contain a copy of every $n$-vertex oriented tree. If we know the number of leaves of an oriented tree, or its maximum degree, can we guarantee a…
We consider solutions to the maximum recursion on weighted branching trees given by$$X\,{\buildrel d\over=}\,\bigvee_{i=1}^{N}{A_iX_i}\vee B,$$where $N$ is a random natural number, $B$ and $\{A_i\}_{i\in\mathbb{N}}$ are random positive…
In this paper the minimum spanning tree problem with uncertain edge costs is discussed. In order to model the uncertainty a discrete scenario set is specified and a robust framework is adopted to choose a solution. The min-max, min-max…
We determine the tree which maximizes the distance between characteristic set and subtree core over all trees on $n$ vertices. The asymptotic nature of this distance is also discussed. The problem of extremizing the distance between…
Decision tree optimization is fundamental to interpretable machine learning. The most popular approach is to greedily search for the best feature at every decision point, which is fast but provably suboptimal. Recent approaches find the…
It is a known fact that, given two rooted binary phylogenetic trees, the concept of maximum acyclic agreement forests is sufficient to compute hybridization networks with minimum hybridization number. In this work, we demonstrate by first…
Applying a method to reconstruct a phylogenetic tree from random data provides a way to detect whether that method has an inherent bias towards certain tree `shapes'. For maximum parsimony, applied to a sequence of random 2-state data, each…
A conjecture of Bandelt and Dress states that the maximum quartet distance between any two phylogenetic trees on $n$ leaves is at most $(\frac 23 +o(1))\binom{n}{4}$. Using the machinery of flag algebras we improve the currently known…