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As the amount of available data continues to grow in fields as diverse as bioinformatics, physics, and remote sensing, the importance of scientific workflows in the design and implementation of reproducible data analysis pipelines…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-02-11 Jonathan Bader , Fabian Skalski , Fabian Lehmann , Dominik Scheinert , Jonathan Will , Lauritz Thamsen , Odej Kao

Disk access latency and transfer times are often considered to have a major and detrimental impact on the running time of software. Developers are often advised to favour in-memory operations and minimise disk access. Furthermore, diskless…

Other Computer Science · Computer Science 2015-03-31 Kamran Karimi , Diwakar Krishnamurthy , Parissa Mirjafari

Today's computing systems require moving data back-and-forth between computing resources (e.g., CPUs, GPUs, accelerators) and off-chip main memory so that computation can take place on the data. Unfortunately, this data movement is a major…

Hardware Architecture · Computer Science 2022-05-31 Geraldo F. Oliveira , Amirali Boroumand , Saugata Ghose , Juan Gómez-Luna , Onur Mutlu

Due to amount of data involved in emerging deep learning and big data applications, operations related to data movement have quickly become the bottleneck. Data-centric computing (DCC), as enabled by processing-in-memory (PIM) and…

Hardware Architecture · Computer Science 2020-09-22 Kamil Khan , Sudeep Pasricha , Ryan Gary Kim

PIM architectures aim to reduce data transfer costs between processors and memory by integrating processing units within memory layers. Prior PIM architectures have shown potential to improve energy efficiency and performance. However, such…

Hardware Architecture · Computer Science 2025-10-10 Parker Hao Tian , Zahra Yousefijamarani , Alaa Alameldeen

Many modern and emerging applications must process increasingly large volumes of data. Unfortunately, prevalent computing paradigms are not designed to efficiently handle such large-scale data: the energy and performance costs to move this…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-07-31 Saugata Ghose , Amirali Boroumand , Jeremie S. Kim , Juan Gómez-Luna , Onur Mutlu

The rapid scaling of artificial neural networks has exposed fundamental limitations of conventional von Neumann computing architectures. In these systems, the physical separation between memory and processing creates a bottleneck, as…

The shift to data-intensive processing from the cloud to the edge has introduced new challenges and expectations for the next generation of intelligent computing systems. As the memory wall continues to grow, modern systems can only meet…

Hardware Architecture · Computer Science 2026-04-16 Denis Hoornaert , Cole Strickler , Manos Athanassoulis , Marco Caccamo , Heechul Yun , Renato Mancuso

The progress in neuromorphic computing is fueled by the development of novel nonvolatile memories capable of storing analog information and implementing neural computation efficiently. However, like most other analog circuits, these devices…

Emerging Technologies · Computer Science 2021-07-12 Z. Fahimi , M. R. Mahmoodi , M. Klachko , H. Nili , H. Kim , D. B. Strukov

Deep neural networks (DNN) have demonstrated effectiveness for various applications such as image processing, video segmentation, and speech recognition. Running state-of-the-art DNNs on current systems mostly relies on either…

Neural and Evolutionary Computing · Computer Science 2019-04-15 Mohsen Imani , Mohammad Samragh , Yeseong Kim , Saransh Gupta , Farinaz Koushanfar , Tajana Rosing

Background: Data driven stratification of patients into biologically informed subtypes holds promise for precision neuropsychiatry, yet neuroimaging-based clustering methods often fail to generalize across cohorts. While algorithmic…

Machine Learning · Computer Science 2025-06-12 Yuetong Yu , Ruiyang Ge , Ilker Hacihaliloglu , Alexander Rauscher , Roger Tam , Sophia Frangou

Nonnegative matrix factorization (NMF) is a powerful technique for dimension reduction, extracting latent factors and learning part-based representation. For large datasets, NMF performance depends on some major issues: fast algorithms,…

Optimization and Control · Mathematics 2015-07-01 Duy-Khuong Nguyen , Tu-Bao Ho

We explore three representative lines of research and demonstrate the utility of our methods on a classification benchmark of brain cancer MRI data. First, we present a capsule network that explicitly learns a representation robust to…

Image and Video Processing · Electrical Eng. & Systems 2020-05-13 Neil Getty , Thomas Brettin , Dong Jin , Rick Stevens , Fangfang Xia

Neuromorphic vision made significant progress in recent years, thanks to the natural match between spiking neural networks and event data in terms of biological inspiration, energy savings, latency and memory use for dynamic visual data…

Neural and Evolutionary Computing · Computer Science 2026-01-19 Amélie Gruel , Pierre Lewden , Adrien F. Vincent , Sylvain Saïghi

Large-scale genomic workflows used in precision medicine can process datasets spanning tens to hundreds of gigabytes per sample, leading to high memory spikes, intensive disk I/O, and task failures due to out-of-memory errors. Simple static…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-11-21 Daniel Mas Montserrat , Ray Verma , Míriam Barrabés , Francisco M. de la Vega , Carlos D. Bustamante , Alexander G. Ioannidis

Functional neuroimaging can measure the brain?s response to an external stimulus. It is used to perform brain mapping: identifying from these observations the brain regions involved. This problem can be cast into a linear supervised…

Machine Learning · Computer Science 2012-07-03 Gael Varoquaux , Alexandre Gramfort , Bertrand Thirion

One of the main bottlenecks when designing a network processing system is very often its memory subsystem. This is mainly due to the state-of-the-art network links operating at very high speeds and to the fact that in order to support…

Hardware Architecture · Computer Science 2011-11-09 I. Papaefstathiou , T. Orphanoudakis , G. Kornaros , C. Kachris , I. Mavroidis , A. Nikologiannis

This paper presents the Neural Cache architecture, which re-purposes cache structures to transform them into massively parallel compute units capable of running inferences for Deep Neural Networks. Techniques to do in-situ arithmetic in…

Hardware Architecture · Computer Science 2018-05-11 Charles Eckert , Xiaowei Wang , Jingcheng Wang , Arun Subramaniyan , Ravi Iyer , Dennis Sylvester , David Blaauw , Reetuparna Das

Deep Neural Networks (DNNs) have become an essential component in many application domains including web-based services. A variety of these services require high throughput and (close to) real-time features, for instance, to respond or…

Machine Learning · Computer Science 2022-09-20 Mohammadamin Abedi , Yanni Iouannou , Pooyan Jamshidi , Hadi Hemmati

With an ever-growing number of parameters defining increasingly complex networks, Deep Learning has led to several breakthroughs surpassing human performance. As a result, data movement for these millions of model parameters causes a…

Neural and Evolutionary Computing · Computer Science 2023-04-12 Christopher Wolters , Brady Taylor , Edward Hanson , Xiaoxuan Yang , Ulf Schlichtmann , Yiran Chen
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