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Graph-based linear scaling electronic structure theory for quantum-mechanical molecular dynamics simulations is adapted to the most recent shadow potential formulations of extended Lagrangian Born-Oppenheimer molecular dynamics, including…

Chemical Physics · Physics 2023-03-08 Christian F. A. Negre , Michael E. Wall , Anders M. N. Niklasson

Real-world optimization problems are generally not just black-box problems, but also involve mixed types of inputs in which discrete and continuous variables coexist. Such mixed-space optimization possesses the primary challenge of modeling…

Machine Learning · Computer Science 2022-02-09 Jaeyeon Ahn , Taehyeon Kim , Seyoung Yun

Transferring latent structure from one environment or problem to another is a mechanism by which humans and animals generalize with very little data. Inspired by cognitive and neurobiological insights, we propose graph schemas as a…

This work considers the problem of finding analytical expressions for the expected values of dis- tributed computing performance metrics when the underlying communication network has a complex structure. Through active probing tests a real…

Adaptation and Self-Organizing Systems · Physics 2013-11-18 Francisco Prieto-Castrillo , Antonio Astillero , María Botón-Fernández

An important source of high clustering coefficient in real-world networks is transitivity. However, existing approaches for modeling transitivity suffer from at least one of the following problems: i) they produce graphs from a specific…

Social and Information Networks · Computer Science 2022-12-30 Morteza Haghir Chehreghani , Mostafa Haghir Chehreghani

We present a structural clustering algorithm for large-scale datasets of small labeled graphs, utilizing a frequent subgraph sampling strategy. A set of representatives provides an intuitive description of each cluster, supports the…

Databases · Computer Science 2016-10-03 Till Schäfer , Petra Mutzel

Agent-based models (ABMs) offer a powerful framework for understanding complex systems. However, their computational demands often become a significant barrier as the number of agents and complexity of the simulation increase. Traditional…

Multiagent Systems · Computer Science 2025-10-23 Steffen Fürst , Tim Conrad , Carlo Jaeger , Sarah Wolf

Graph clustering aims at discovering a natural grouping of the nodes such that similar nodes are assigned to a common cluster. Many different algorithms have been proposed in the literature: for simple graphs, for graphs with attributes…

Machine Learning · Computer Science 2023-11-06 Ylli Sadikaj , Yllka Velaj , Sahar Behzadi , Claudia Plant

Analyzing interconnection structures among underlying entities or objects in a dataset through the use of graph analytics has been shown to provide tremendous value in many application domains. However, graphs are not the primary…

Databases · Computer Science 2017-02-14 Konstantinos Xirogiannopoulos , Amol Deshpande

Recent trends like the Internet of Things (IoT) suggest a vision of dense and multi-scale deployments of computing devices in nearly all kinds of environments. A prominent engineering challenge revolves around programming the collective…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-10-08 Giorgio Audrito , Roberto Casadei , Ferruccio Damiani , Gianluca Torta , Mirko Viroli

Modern energy systems in vehicles and built infrastructure are governed by high-dimensional dynamics spanning multiple physical domains (e.g., electrical, thermal, mechanical) and timescales. This tutorial paper presents a graph-based…

We introduce the Hierarchical Unified Graph Representation (HUGR): a novel graph based intermediate representation for mixed quantum-classical programs. HUGR's design features high expressivity and extensibility to capture the capabilities…

Thermodynamic models are often vital when characterising complex systems, particularly natural gas, electrolyte, polymer, pharmaceutical and biological systems. However, their implementations have historically been abstruse and cumbersome,…

Computational Physics · Physics 2025-06-26 Pierre J. Walker , Hon-Wa Yew , Andrés Riedemann

Graph-based signal processing techniques have become essential for handling data in non-Euclidean spaces. However, there is a growing awareness that these graph models might need to be expanded into `higher-order' domains to effectively…

Machine Learning · Computer Science 2024-04-15 Mustafa Hajij , Ghada Zamzmi , Theodore Papamarkou , Aldo Guzmán-Sáenz , Tolga Birdal , Michael T. Schaub

Recent findings in neuroscience suggest that the human brain represents information in a geometric structure (for instance, through conceptual spaces). In order to communicate, we flatten the complex representation of entities and their…

Machine Learning · Computer Science 2020-02-05 Agnieszka Słowik , Abhinav Gupta , William L. Hamilton , Mateja Jamnik , Sean B. Holden

A new class of graphical models capturing the dependence structure of events that occur in time is proposed. The graphs represent so-called local independences, meaning that the intensities of certain types of events are independent of some…

Statistics Theory · Mathematics 2013-07-11 Vanessa Didelez

In this paper, we propose a new representation for multiview image sets. Our approach relies on graphs to describe geometry information in a compact and controllable way. The links of the graph connect pixels in different images and…

Multimedia · Computer Science 2013-12-23 Thomas Maugey , Antonio Ortega , Pascal Frossard

Like bisimulations, simulations and directed simulations are used for analyzing graph-based structures such as automata, labeled transition systems, linked data networks, Kripke models and interpretations in description logic. Simulations…

Data Structures and Algorithms · Computer Science 2020-12-04 Linh Anh Nguyen

Enriching the robot representation of the operational environment is a challenging task that aims at bridging the gap between low-level sensor readings and high-level semantic understanding. Having a rich representation often requires…

Robotics · Computer Science 2023-09-25 Francesco Argenziano , Vincenzo Suriani , Daniele Nardi

We demonstrate that graph-based models are fully capable of representing higher-order interactions, and have a long history of being used for precisely this purpose. This stands in contrast to a common claim in the recent literature on…

Physics and Society · Physics 2026-02-20 Tiago P. Peixoto , Leto Peel , Thilo Gross , Manlio De Domenico
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