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We consider the problem of coding for the substring channel, in which information strings are observed only through their (multisets of) substrings. Due to existing DNA sequencing techniques and applications in DNA-based storage systems,…

Information Theory · Computer Science 2024-03-27 Yonatan Yehezkeally , Nikita Polyanskii

Error correction code (ECC) is an integral part of the physical communication layer, ensuring reliable data transfer over noisy channels. Recently, neural decoders have demonstrated their advantage over classical decoding techniques.…

Information Theory · Computer Science 2022-09-28 Yoni Choukroun , Lior Wolf

Modern DRAM modules are often equipped with hardware error correction capabilities, especially for DRAM deployed in large-scale data centers, as process technology scaling has increased the susceptibility of these devices to errors. To…

Hardware Architecture · Computer Science 2017-06-29 Yixin Luo , Saugata Ghose , Tianshi Li , Sriram Govindan , Bikash Sharma , Bryan Kelly , Amirali Boroumand , Onur Mutlu

We consider linear network error correction (LNEC) coding when errors may occur on edges of a communication network of which the topology is known. In this paper, we first revisit and explore the framework of LNEC coding, and then unify two…

Information Theory · Computer Science 2021-03-16 Xuan Guang , Raymond W. Yeung

Improvements in main memory storage density are primarily driven by process technology scaling, which negatively impacts reliability by exacerbating various circuit-level error mechanisms. To compensate for growing error rates, both memory…

Hardware Architecture · Computer Science 2022-04-25 Minesh Patel

Convolutional network-error correcting codes (CNECCs) are known to provide error correcting capability in acyclic instantaneous networks within the network coding paradigm under small field size conditions. In this work, we investigate the…

Information Theory · Computer Science 2010-01-08 K. Prasad , B. Sundar Rajan

Reducing the threshold voltage of electronic devices increases their sensitivity to electromagnetic radiation dramatically, increasing the probability of changing the memory cells' content. Designers mitigate failures using techniques such…

Hardware Architecture · Computer Science 2023-07-14 David Freitas , David Mota , Clailton Lopes , Daniel Simões , Jarbas Silveira , João Mota , César Marcon

Erasure coding techniques are getting integrated in networked distributed storage systems as a way to provide fault-tolerance at the cost of less storage overhead than traditional replication. Redundancy is maintained over time through…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-06-12 Lluis Pamies-Juarez , Frédérique Oggier , Anwitaman Datta

This work deals with error correction for non-volatile memories that are partially defective at some levels. Such memory cells can only store incomplete information since some of their levels cannot be utilized entirely due to, e.g.,…

Information Theory · Computer Science 2022-08-23 Haider Al Kim , Kai Jie Chan

Sequencing a DNA strand, as part of the read process in DNA storage, produces multiple noisy copies which can be combined to produce better estimates of the original strand; this is called trace reconstruction. One can reduce the error rate…

Information Theory · Computer Science 2024-08-22 Sundara Rajan Srinivasavaradhan , Sivakanth Gopi , Henry D. Pfister , Sergey Yekhanin

Distributed storage systems support failures of individual devices by the use of replication or erasure correcting codes. While erasure correcting codes offer a better storage efficiency than replication for similar fault tolerance, they…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-12-10 Nicolas Le Scouarnec

This study explores the self-synchronization problem in DNA coding, specifically addressing single-deletion errors without using delimiters between codewords. We aim to identify the beginning of each codeword without using delimiters,…

Information Theory · Computer Science 2026-03-31 Whan-Hyuk Choi

Codes for correcting sticky insertions/deletions and limited-magnitude errors have attracted significant attention due to their applications of flash memories, racetrack memories, and DNA data storage systems. In this paper, we first…

Information Theory · Computer Science 2023-02-07 Shuche Wang , Van Khu Vu , Vincent Y. F. Tan

Erasure correcting codes are widely used to ensure data persistence in distributed storage systems. This paper addresses the simultaneous repair of multiple failures in such codes. We go beyond existing work (i.e., regenerating codes by…

Information Theory · Computer Science 2013-09-18 Anne-Marie Kermarrec , Gilles Straub , Nicolas Le Scouarnec

Erasure codes are an efficient means of storing data across a network in comparison to data replication, as they tend to reduce the amount of data stored in the network and offer increased resilience in the presence of node failures. The…

Information Theory · Computer Science 2016-11-17 K. V. Rashmi , Nihar B. Shah , P. Vijay Kumar

Nanopore sequencers are emerging as promising new platforms for high-throughput sequencing. As with other technologies, sequencer errors pose a major challenge for their effective use. In this paper, we present a novel information theoretic…

Information Theory · Computer Science 2016-01-12 Jarek Duda , Wojciech Szpankowski , Ananth Grama

A new class of exact-repair regenerating codes is constructed by stitching together shorter erasure correction codes, where the stitching pattern can be viewed as block designs. The proposed codes have the "help-by-transfer" property where…

Information Theory · Computer Science 2017-08-04 Chao Tian , Birenjith Sasidharan , Vaneet Aggarwal , Vinay A. Vaishampayan , P. Vijay Kumar

DNA data storage systems encode digital data into DNA strands, enabling dense and durable storage. Efficient data retrieval depends on coverage depth, a key performance metric. We study the random access coverage depth problem and focus on…

Information Theory · Computer Science 2025-07-29 Şeyma Bodur , Stefano Lia , Hiram H. López , Rati Ludhani , Alberto Ravagnani , Lisa Seccia

Predicting faults before they occur helps to avoid potential safety hazards. Furthermore, planning the required maintenance actions in advance reduces operation costs. In this article, the focus is on electrochemical cells. In order to…

Machine Learning · Computer Science 2020-07-28 Daniel Buades Marcos , Soumaya Yacout , Said Berriah

We study the optimal design of heterogeneous Coded Elastic Computing (CEC) where machines have varying computation speeds and storage. CEC introduced by Yang et al. in 2018 is a framework that mitigates the impact of elastic events, where…

Information Theory · Computer Science 2020-08-13 Nicholas Woolsey , Rong-Rong Chen , Mingyue Ji