Related papers: Knotting statistics for polygons in lattice tubes
We study the linear extension complexity of stable set polytopes of perfect graphs. We make use of known structural results permitting to decompose perfect graphs into basic perfect graphs by means of two graph operations: 2-join and skew…
We examine the structure and dimensionality of the Jones polynomial using manifold learning techniques. Our data set consists of more than 10 million knots up to 17 crossings and two other special families up to 2001 crossings. We introduce…
We present a Monte Carlo algorithm that provides efficient and unbiased sampling of polymer melts consisting of two chains of equal length that jointly visit all the sites of a cubic lattice with rod geometry L x L x rL and non-periodic…
Large scale molecular dynamics simulations on graphic processing units (GPUs) are employed to study the scaling behavior of ring polymers with various topological constraints in melts. Typical sizes of rings containing $3_1$, $5_1$ knots…
In the first part of this paper, we determine the asymptotic subgroup growth of the fundamental group of a torus knot complement. In the second part, we use this to study random finite degree covers of torus knot complements. We determine…
By means of contact-density chain-growth simulations, we investigate a simple lattice model of a flexible polymer interacting with an attractive substrate. The contact density is a function of the numbers of monomer-substrate and…
We introduce a numerical invariant \beta(K) of a knot K which measures how non-alternating K is. We prove an inequality between \beta (K) and the (knot Floer) thickness of K. As an application we show that all Montesinos knots have…
In the first part of this work a summary is provided of some recent experiments and theoretical results which are relevant in the research of systems of polymer rings in nontrivial topological conformations. Next, some advances in modeling…
Using Monte Carlo simulations and advanced knot localization methods, we analyze the length and distribution of prime components in composite knots tied on Freely Jointed Rings (FJRs). For increasing contour length, we observe the…
In a previous paper Kobayashi and Rieck defined the growth rate of the tunnel number of a knot $K$, a knot invariant that measures the asymptotic behavior of the tunnel number under iterated connected sum of $K$. We denote the growth rate…
We study vectors chosen at random from a compact convex polytope in $\mathbb{R}^n$ given by a finite number of linear constraints. We determine which projections of these random vectors are asymptotically normal as $n\to\infty$. Marginal…
The Tutte polynomial for matroids is not directly applicable to polymatroids. For instance, deletion-contraction properties do not hold. We construct a polynomial for polymatroids which behaves similarly to the Tutte polynomial of a…
We have calculated long series expansions for self-avoiding walks and polygons on the honeycomb lattice, including series for metric properties such as mean-squared radius of gyration as well as series for moments of the area-distribution…
Early last century witnessed both the complete classification of 2-dimensional manifolds and a proof that classification of 4-dimensional manifolds is undecidable, setting up 3-dimensional manifolds as a central battleground of topology to…
In the realm of Boltzmann-Gibbs statistical mechanics there are three well known isomorphic connections with random geometry, namely (i) the Kasteleyn-Fortuin theorem which connects the $\lambda \to 1$ limit of the $\lambda$-state Potts…
In this paper, we investigate the trace set of a Fuchsian lattice. There are two results of this paper: the first is that for a non-uniform lattice, we prove Scmutz's conjecture: the trace set of a Fuchsian lattice exhibits linear growth if…
We discuss an "extrinsic" property of knots in a 3-subspace of the 3-sphere $S^3$ to characterize how the subspace is embedded in $S^3$. Specifically, we show that every knot in a subspace of the 3-sphere is transient if and only if the…
We discuss the scattering function of a Gaussian random polygon with N nodes under a given topological constraint through simulation. We obtain the Kratky plot of a Gaussian polygon of N=200 having a fixed knot for some different knots such…
Given a knot K in the 3-sphere, consider a singular disk bounded by K and the intersections of K with the interior of the disk. The absolute number of intersections, minimised over all choices of singular disk with a given algebraic number…
We investigate several conjectures in geometric topology by assembling computer data obtained by studying weaving knots, a doubly infinite family $W(p,n)$ of examples of hyperbolic knots. In particular, we compute some important polynomial…