Related papers: Knotting statistics for polygons in lattice tubes
We have studied kinetics of random sequential adsorption of mixtures on a square lattice using Monte Carlo method. Mixtures of linear short segments and long segments were deposited with the probability $p$ and $1-p$, respectively. For…
Given a graph $G$ and collection of subgraphs $T$ (called tiles), we consider covering $G$ with copies of tiles in $T$ so that each vertex $v\in G$ is covered with a predetermined multiplicity. The multinomial tiling model is a natural…
We discuss the response of thin cylindrical tubes to small indentations. The stretching-free embedding of these surfaces is completely determined by the embedding of one edge curve, thus reducing their bending response to an effectively one…
Bridging algorithms are global Monte Carlo moves which allow for an efficient sampling of single polymer chains. In this manuscript we discuss the adaptation of three bridging algorithms from lattice to continuum models, and give details on…
The viscous flow of polymer chains in dense melts is dominated by topological constraints whenever the single chain contour length, N, becomes larger than the characteristic scale Ne, defining comprehensively the macroscopic rheological…
We produce embeddings of knots in thin position that admit compressible thin levels. We also find the bridge number of tangle sums where each tangle is high distance.
Monte Carlo simulations are used to study the conformational behavior of a semiflexible polymer confined to cylindrical and conical channels. The channels are sufficiently narrow that the conditions for the Odijk regime are marginally…
Kronecker coefficients encode the tensor products of complex irreducible representations of symmetric groups. Their stability properties have been considered recently by several authors (Vallejo, Pak and Panova, Stembridge). We describe a…
We describe a class of growth algorithms for finding low energy states of heteropolymers. These polymers form toy models for proteins, and the hope is that similar methods will ultimately be useful for finding native states of real proteins…
Ropelength and embedding thickness are related measures of geometric complexity of classical knots and links in Euclidean space. In their recent work, Freedman and Krushkal posed a question regarding lower bounds for embedding thickness of…
We use the notions of reflexivity and of reflexive dimensions in order to introduce probability measures for lattice polytopes and initiate the investigation of their statistical properties. Examples of applications to discrete geometry…
We study the dimer model on special subgraphs of the square hexagon lattice called "tower graphs" of size $N$. Using integrable probability techniques, we confirm that as $N \rightarrow \infty$, the local statistics are translation…
This paper visualizes a knot reduction algorithm
We study optimal approximation of stochastic processes by polynomial splines with free knots. The number of free knots is either a priori fixed or may depend on the particular trajectory. For the $s$-fold integrated Wiener process as well…
A bargraph is a self-avoiding lattice path with steps $U=(0,1)$, $H=(1,0)$ and $D=(0,-1)$ that starts at the origin and ends on the $x$-axis, and stays strictly above the $x$-axis everywhere except at the endpoints. Bargraphs have been…
A knot theory for two-dimensional square lattice is proposed, which sheds light on design of new two-dimensional material with high topological numbers. We consider a two-band model, focusing on the Hall conductance {\sigma}xy = e^2/hbar*P,…
In this note we study solid tori in contact manifolds. Specifically, we study the width of a knot type and give criteria for when it is equal to the maximal Thurston-Bennequin invariant, and when it is larger. We also prove there are many…
Recent developments of microscopic mechanical experiments allow the manipulation of individual polymer molecules in two main ways: \textit{uniform} stretching by external forces and \textit{non-uniform} stretching by external fields. Many…
Self-avoiding polymers in strictly two-dimensional ($d=2$) melts are investigated by means of molecular dynamics simulation of a standard bead-spring model with chain lengths ranging up to N=2048. % The chains adopt compact configurations…
We study the formation of knots on a macroscopic ball-chain, which is shaken on a horizontal plate at 12 times the acceleration of gravity. We find that above a certain critical length, the knotting probability is independent of chain…