Related papers: Knotting statistics for polygons in lattice tubes
Due to the complex characteristics of bottle-brush polymers, it became a challenge to develop an efficient algorithm for studying such macromolecules under various solvent conditions or some constraints in the space by using computer…
A physical interpretation of the rope simulated by the SONO algorithm is presented. Properties of the tight polygonal knots delivered by the algorithm are analyzed. An algorithm for bounding the ropelength of a smooth inscribed knot is…
We introduce a framework for adsorption of a single polymer in which the topology of the polymer is quenched before adsorption, in contrast to more standard adsorption models having annealed topology. Our "topology" refers either to the…
We have developed a parallel algorithm that allows us to enumerate the number of self-avoiding polygons on the square lattice to perimeter length 110. We have also extended the series for the first 10 area-weighted moments and the radius of…
The distribution of monomers in a coating of grafted and adsorbing polymers is modelled using a grafted staircase polygon in the square lattice. The adsorbing staircase polygon consists of a bottom and a top lattice path (branches) and the…
Inspired by how certain proteins "sense" knots and entanglements in DNA molecules, here we ask if there exist local geometric features that may be used as a read-out of the underlying topology of generic polymers. We perform molecular…
We discuss a semi-implicit numerical scheme that allows for minimizing the bending energy of curves within certain isotopy classes. To this end we consider a weighted sum of the bending energy and the tangent-point functional. Based on…
The interplay of topological constraints and Coulomb interactions in static and dynamic properties of charged polymers is investigated by numerical simulations and scaling arguments. In the absence of screening, the long-range interaction…
We establish a new fundamental relationship between total curvature of knots and crossing number. If K is a smooth knot in 3-space, R the cross-section radius of a uniform tube neighborhood of K, L the arclength of K, and k the total…
Simple closed curves in the plane can be mapped to nontrivial knots under the action of origami foldings that allow the paper to self-intersect. We show all tame knot types may be produced in this manner, motivating the development of a new…
We study scale-invariant geometric quantities associated with embedded closed curves in Euclidean three-space, with an emphasis on their behavior under optimization within a fixed knot type. Given a Euclidean-invariant and scale-covariant…
We study the equilibrium shapes of prime and composite knots confined to two dimensions. Using rigorous scaling arguments we show that, due to self-avoiding effects, the topological details of prime knots are localised on a small portion of…
Let $\mathcal {M}$ be the space of all, including singular, long knots in 3-space and for which a fixed projection into the plane is an immersion. Let $cl(\Sigma^{(1)}_{iness})$ be the closure of the union of all singular knots in $\mathcal…
We construct families of trivial $2$-knots $K_i$ in $\mathbb{R}^4$ such that the maximal complexity of $2$-knots in any isotopy connecting $K_i$ with the standard unknot grows faster than a tower of exponentials of any fixed height of the…
We prove that on the set of lattice paths with steps N=(0,1) and E=(1,0) that lie between two fixed boundaries T and B (which are themselves lattice paths), the statistics `number of E steps shared with B' and `number of E steps shared with…
Knotted ribbons form an important topic in knot theory. They have applications in natural sciences, such as cyclic duplex DNA modeling. A flat knotted ribbon can be obtained by gently pulling a knotted ribbon tight so that it becomes flat…
For a knot K in S^3, let T(K) be the characteristic toric sub-orbifold of the orbifold (S^3,K) as defined by Bonahon and Siebenmann. If K has unknotting number one, we show that an unknotting arc for K can always be found which is disjoint…
The tube model is a central concept in polymer physics, and allows to reduce the complex many-filament problem of an entangled polymer solution to a single filament description. We investigate the probability distribution function of…
Generalizing Milnor's result that an FTC (finite total curvature) knot has an isotopic inscribed polygon, we show that any two nearby knotted FTC graphs are isotopic by a small isotopy. We also show how to obtain sharper constants when the…
We present computer simulations to examine probability distributions of gyration radius for the no-thickness closed polymers of N straight segments of equal length. We are particularly interested in the conditional distributions when the…