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Chromatin and associated proteins constitute the highly folded structure of chromosomes. We consider a self-avoiding polymer model of the chromatin, segments of which may get cross-linked via protein binders that repel each other. The…

Soft Condensed Matter · Physics 2019-06-13 Amit Kumar , Debasish Chaudhuri

Using molecular dynamics simulations of a tangent-soft-sphere bead-spring polymer model, we examine the degree to which semiflexible polymer melts solidify at isostaticity. Flexible and stiff chains crystallize when they are isostatic as…

Soft Condensed Matter · Physics 2017-07-21 Christian O. Plaza-Rivera , Hong T. Nguyen , Robert S. Hoy

We examine the condensed states of a simple semiflexible copolymer in which there are two monomer types that are immiscible with each other and with the solvent. Although this is similar to the well known problem of collapse for a…

Soft Condensed Matter · Physics 2007-05-23 E. Hernandez-Zapata , I. R. Cooke , D. R. M. Williams

In my PhD thesis I studied cooperative phenomena arise in complex systems using the methods of statistical and computational physics. The aim of my work was also to study the critical behaviour of interacting many-body systems during their…

Statistical Mechanics · Physics 2009-07-23 Márton Karsai

The polymerization dynamics of double-stranded polymers, such as actin filaments, is investigated theoretically using simple chemical kinetic models that explicitly take into account some microscopic details of the polymer structure and the…

Soft Condensed Matter · Physics 2009-11-10 Evgeny B. Stukalin , Anatoly B. Kolomeisky

Adsorption on a boundary line confining a monolayer of particles self-assembling into clusters is studied by MC simulations. We focus on a system of particles interacting via competing interaction potential in which effectively short-range…

Soft Condensed Matter · Physics 2020-01-22 E. Bildanau , J. Pȩkalski , V. Vikhrenko , A. Ciach

While the dynamics of polymer chains in equilibrium media is well understood by now, the polymer dynamics in active non-equilibrium environments can be very different. Here we study the dynamics of polymers in a viscous medium containing…

Soft Condensed Matter · Physics 2017-06-23 Jaeoh Shin , Andrey G. Cherstvy , Won Kyu Kim , Vasily Zaburdaev

We present a unified scaling theory for the dynamics of monomers for dilute solutions of semiflexible polymers under good solvent conditions in the free draining limit. Our theory encompasses the well-known regimes of mean square…

Soft Condensed Matter · Physics 2015-06-17 Aiqun Huang , Ramesh Adhikari , Aniket Bhattacharya , Kurt Binder

The influence of structural constraints on the relaxation dynamics of three polyurea networks with varying degree of crosslinking, has been studied by means of a thorough analysis of broadband dielectric spectroscopy measurements. Two…

Soft Condensed Matter · Physics 2018-10-03 Nerea Sebastián , Christophe Contal , Antoni Sánchez-Ferrer , Marco Pieruccini

Ultra-cold atomic systems provide a versatile platform for exploring quantum phenomena, offering tunable interactions and diverse trapping geometries. In this study, we investigate a one-dimensional system of trapped fermionic atoms using…

Quantum Gases · Physics 2025-09-16 Francisco Figueiredo , Itzhak Roditi

During the last 3 years, our group has investigated extensively the complexation mechanism between neutral-polyelectrolyte block copolymers with oppositely charged species. These species are surfactant micelles, multivalent counterions and…

Soft Condensed Matter · Physics 2007-05-23 J. -F. Berret , P. Herve , M. Morvan , K. Yokota , M. Destarac , J. Oberdisse , I. Grillo , R. Schweins

We study two cross-linked polymer systems in the strong stretching regime. The first consists of two polymers sharing one endpoint, with the other two endpoints coupled by a harmonic potential. Within the weakly bending approximation, we…

Soft Condensed Matter · Physics 2026-03-30 Geunho Noh , Panayotis Benetatos

Block copolymer melts self-assemble in the bulk into a variety of nanostructures, making them perfect candidates to template the position of nanoparticles. The morphological changes of block copolymers are studied in the presence of a…

Soft Condensed Matter · Physics 2019-10-31 Javier Diaz , Marco Pinna , Andrei V. Zvelindovsky , Ignacio Pagonabarraga

We report molecular dynamics simulations of a system of repulsive, polymer-tethered colloidal particles. We use an explicit polymer model to explore how the length and the behavior of the polymer (ideal or self-avoiding) affect the ability…

Soft Condensed Matter · Physics 2015-05-14 Behnaz Bozorgui , Maya Sen , William L. Miller , Josep C. Pamies , Angelo Cacciuto

The presence of a non-centrosymmetric crystal structure and in-plane mirror symmetry allows an Ising spin-orbit coupling to form in some two-dimensional materials. Examples include transition metal dichalcogenide superconductors like…

Superconductivity · Physics 2025-03-04 Subhojit Roy , Andreas Kreisel , Brian M. Andersen , Shantanu Mukherjee

Interaction within an ensemble of coupled nonlinear oscillators induces a variety of collective behaviors. One of the most fascinating is a chimera state which manifests the coexistence of spatially distinct populations of coherent and…

Adaptation and Self-Organizing Systems · Physics 2020-08-18 Nikita Frolov , Vladimir Maksimenko , Soumen Majhi , Sarbendu Rakshit , Dibakar Ghosh , Alexander Hramov

The presence of nanoparticles in a diblock copolymer leads to changes in the morphology and properties of the matrix and can produce highly organized hybrid materials. The resulting material properties depend not only on the polymer…

Soft Condensed Matter · Physics 2018-05-30 Javier Diaz , Marco Pinna , Andrei Zvelindovsky , Adelchi Asta , Ignacio Pagonabarraga

In this paper we consider a two-dimensional copolymer consisting of a random concatenation of hydrophobic and hydrophilic monomers near a linear interface separating oil and water acting as solvents. The configurations of the copolymer are…

Probability · Mathematics 2012-02-21 E. Bolthausen , F. den Hollander , A. A. Opoku

Photon correlation spectroscopy and rheological measurements are performed to investigate the microscopic dynamics and mechanical responses of aqueous solutions of triblock copolymers and aqueous mixtures of triblock copolymers and anionic…

Soft Condensed Matter · Physics 2011-09-28 Rajib Basak , Nabaneeta Mukhopadhyay , Ranjini Bandyopadhyay

Self-assembly of proteins is a biological phenomenon which gives rise to spontaneous formation of amyloid fibrils or polymers. The starting point of this phase, called nucleation exhibits an important variability among replicated…

Biomolecules · Quantitative Biology 2016-03-22 Marie Doumic , Sarah Eugene , Philippe Robert