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Understanding the global organization of complicated and high dimensional data is of primary interest for many branches of applied sciences. It is typically achieved by applying dimensionality reduction techniques mapping the considered…
Simulated high-dimensional data is useful for testing, validating, and improving algorithms used in dimension reduction, supervised and unsupervised learning. High-dimensional data is characterized by multiple variables that are dependent…
The xdvir package provides functions for rendering LaTeX fragments as labels, annotations, and data symbols in R plots. There are convenient high-level functions for rendering LaTeX fragments, including labels on ggplot2 plots, plus…
This paper introduces GephiForR, an R package designed to replicate Java-based Gephi's key plotting tools in R. The package is accessible to those with minimal R experience and, in particular, implements ForceAtlas2, the key layout feature…
R is a language and computing environment that has been developed for data manipulation, statistical computing, and scientific graphing. In the paper, we demonstrate its use analyzing data collected in a few experiments taken from an…
CircSpaceTime is the only R package currently available that implements Bayesian models for spatial and spatio-temporal interpolation of circular data. Such data are often found in applications where, among the many, wind directions, animal…
Scalable learning for planning research generally involves juggling between different programming languages for handling learning and planning modules effectively. Interpreted languages such as Python are commonly used for learning routines…
stCEG is an R package which allows a user to fully specify a Chain Event Graph (CEG) model from data and to produce interactive plots. It includes functions for the user to visualise spatial variables they wish to include in the model.…
Self-organizing map(SOM) have been widely applied in clustering, this paper focused on centroids of clusters and what they reveal. When the input vectors consists of time, latitude and longitude, the map can be strongly linked to physical…
iGraphMatch is an R package for finding corresponding vertices between two graphs, also known as graph matching. The package implements three categories of prevalent graph matching algorithms including relaxation-based, percolation-based,…
Graphical models provide powerful tools to uncover complicated patterns in multivariate data and are commonly used in Bayesian statistics and machine learning. In this paper, we introduce the R package BDgraph which performs Bayesian…
This paper introduces ReeSPOT, a novel Reeb graph-based method to model patterns of life in human trajectories (akin to a fingerprint). Human behavior typically follows a pattern of normalcy in day-to-day activities. This is marked by…
One form of data collected in ecology is phenological, describing the timing of life stages. It can be tempting to analyze such data using a continuous distribution or to model individual transitions via probit/logit models. Such…
Systems that rely on forecasts to make decisions, e.g. control or energy trading systems, require frequent updates of the forecasts. Usually, the forecasts are updated whenever new observations become available, hence in an online setting.…
Predicting future locations of agents in the scene is an important problem in self-driving. In recent years, there has been a significant progress in representing the scene and the agents in it. The interactions of agents with the scene and…
We present vivid, an R package for visualizing variable importance and variable interactions in machine learning models. The package provides a range of displays including heatmap and graph-based displays for viewing variable importance and…
In this paper, we present a new R package COREclust dedicated to the detection of representative variables in high dimensional spaces with a potentially limited number of observations. Variable sets detection is based on an original graph…
Clustering of longitudinal data is used to explore common trends among subjects over time for a numeric measurement of interest. Various R packages have been introduced throughout the years for identifying clusters of longitudinal patterns,…
Temporal graphs are commonly used to represent time-resolved relations between entities in many natural and artificial systems. Many techniques were devised to investigate the evolution of temporal graphs by comparing their state at…
The use of Hilbert curves to visualize massive vector of data is revisited following previous authors. The Hilbert curve mapping preserves locality and makes meaningful representation of the data. We call such visualization as Hilbert…