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Motivation: Receptor-binding proteins (RBPs) initiate viral infection and determine host specificity, serving as key targets for phage engineering and therapy. However, the identification of RBPs is complicated by their extreme sequence…

Genomics · Quantitative Biology 2026-03-17 Xiling Luo , Le Ou-Yang , Yang Shen , Jiaojiao Guan , Dehan Cai , Jun Zhang , Yanni Sun , Jiayu Shang

Within machine learning, the supervised learning field aims at modeling the input-output relationship of a system, from past observations of its behavior. Decision trees characterize the input-output relationship through a series of nested…

Machine Learning · Statistics 2019-05-20 Arnaud Joly

In this paper, we test machine learning methods for results merging in patent document retrieval. Specifically, we examine random forest, decision tree, support vector machine (SVR), linear regression, polynomial regression, and deep neural…

Information Retrieval · Computer Science 2022-03-02 Vasileios Stamatis , Michail Salampasis

Label distribution learning (LDL) requires the learner to predict the degree of correlation between each sample and each label. To achieve this, a crucial task during learning is to leverage the correlation among labels. Deep Forest (DF) is…

Machine Learning · Computer Science 2026-02-09 Jia-Le Xu , Shen-Huan Lyu , Yu-Nian Wang , Ning Chen , Zhihao Qu , Bin Tang , Baoliu Ye

Iterative Filtering (IF) is an alternative technique to the Empirical Mode Decomposition (EMD) algorithm for the decomposition of non-stationary and non-linear signals. Recently in [1] IF has been proved to be convergent for any $L^2$…

Numerical Analysis · Mathematics 2015-07-28 Antonio Cicone , Haomin Zhou

Time series classification (TSC) aims to predict the class label of a given time series, which is critical to a rich set of application areas such as economics and medicine. State-of-the-art TSC methods have mostly focused on classification…

Machine Learning · Computer Science 2021-06-01 Nestor Cabello , Elham Naghizade , Jianzhong Qi , Lars Kulik

This paper introduces a novel framework for enhancing Random Forest classifiers by integrating probabilistic feature sampling and hyperparameter tuning via Simulated Annealing. The proposed framework exhibits substantial advancements in…

Machine Learning · Computer Science 2025-11-12 Kowshik Balasubramanian , Andre Williams , Ismail Butun

Random forests remain among the most popular off-the-shelf supervised machine learning tools with a well-established track record of predictive accuracy in both regression and classification settings. Despite their empirical success as well…

Machine Learning · Statistics 2020-09-15 Lucas Mentch , Siyu Zhou

Age estimation from facial images is typically cast as a label distribution learning or regression problem, since aging is a gradual progress. Its main challenge is the facial feature space w.r.t. ages is inhomogeneous, due to the large…

Computer Vision and Pattern Recognition · Computer Science 2019-08-26 Wei Shen , Yilu Guo , Yan Wang , Kai Zhao , Bo Wang , Alan Yuille

Recent work on large language models (LLMs) has emphasized the importance of scaling inference compute. From this perspective, the state-of-the-art method Scattered Forest Search (SFS) has been proposed, employing Monte Carlo Tree Search…

Machine Learning · Computer Science 2026-04-28 Yuto Tanaka , Issei Sato

Plants monitor their surrounding environment and control their physiological functions by producing an electrical response. We recorded electrical signals from different plants by exposing them to Sodium Chloride (NaCl), Ozone (O3) and…

Prediction in high dimensional settings is difficult due to large by number of variables relative to the sample size. We demonstrate how auxiliary "co-data" can be used to improve the performance of a Random Forest in such a setting.…

Applications · Statistics 2017-06-05 Dennis E. te Beest , Steven W. Mes , Ruud H. Brakenhoff , Mark A. van de Wiel

Magnetic Resonance Fingerprinting (MRF) enables the simultaneous quantification of multiple properties of biological tissues. It relies on a pseudo-random acquisition and the matching of acquired signal evolutions to a precomputed…

Gene expression of social actions in Drosophilae has been attracting wide interest from biologists, medical scientists and psychologists. Gene-edited Drosophilae have been used as a test platform for experimental investigation. For example,…

Computer Vision and Pattern Recognition · Computer Science 2019-09-12 Khan Faraz , Ahmed Bouridane , Richard Jiang , Tiancheng Xia , Paul Chazot , Abdel Ennaceur

Advances in image diffusion models have recently led to notable improvements in the generation of high-quality images. In combination with Neural Radiance Fields (NeRFs), they enabled new opportunities in 3D generation. However, most…

Computer Vision and Pattern Recognition · Computer Science 2024-03-28 Jan-Niklas Dihlmann , Andreas Engelhardt , Hendrik Lensch

Within a case study on the protein-protein interaction network (PIN) of Drosophila melanogaster we investigate the relation between the network's spectral properties and its structural features such as the prevalence of specific subgraphs…

Molecular Networks · Quantitative Biology 2009-11-10 Christel Kamp , Kim Christensen

We introduce canonical correlation forests (CCFs), a new decision tree ensemble method for classification and regression. Individual canonical correlation trees are binary decision trees with hyperplane splits based on local canonical…

Machine Learning · Statistics 2017-08-10 Tom Rainforth , Frank Wood

The reconstruction of dynamic positron emission tomography (PET) images from noisy projection data is a significant but challenging problem. In this paper, we introduce an unsupervised learning approach, Non-negative Implicit Neural…

Computer Vision and Pattern Recognition · Computer Science 2025-06-25 Chaozhi Zhang , Wenxiang Ding , Roy Y. He , Xiaoqun Zhang , Qiaoqiao Ding

We make three contributions in this paper. First, we present an approach for compiling a random forest classifier into a set of circuits, where each circuit directly encodes the instances in some class of the classifier. We show empirically…

Artificial Intelligence · Computer Science 2026-03-17 Chunxi Ji , Adnan Darwiche

Magnetic Resonance Fingerprinting (MRF) is an emerging technology with the potential to revolutionize radiology and medical diagnostics. In comparison to traditional magnetic resonance imaging (MRI), MRF enables the rapid, simultaneous,…