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We present some results of simulations of population growth and evolution, using the standard asexual Penna model, with individuals characterized by a string of bits representing a genome containing some possible mutations. After about…

Populations and Evolution · Quantitative Biology 2009-11-11 Mikolaj Sitarz , Andrzej Z. Maksymowicz

The $N$-particle branching random walk is a discrete time branching particle system with selection. We have $N$ particles located on the real line at all times. At every time step each particle is replaced by two offspring, and each…

Probability · Mathematics 2021-02-25 Sarah Penington , Matthew I. Roberts , Zsófia Talyigás

In this paper we review and extend our earlier recent work on thermostated systems. A description of nano-biological systems by Markov chains in coordinate space in the strongly overdamped limit is presented. Characterization of the most…

Subcellular Processes · Quantitative Biology 2015-12-01 Ronald F. Fox

We consider Markov jump processes describing structured populations with interactions via density dependance. We propose a Markov construction with a distinguished individual which allows to describe the random tree and random sample at a…

Probability · Mathematics 2022-07-20 Vincent Bansaye

Biological evolution in a sequence space with random fitnesses is studied within Eigen's quasispecies model. A strong selection limit is employed, in which the population resides at a single sequence at all times. Evolutionary trajectories…

Statistical Mechanics · Physics 2009-11-07 Joachim Krug , Christian Karl

A simplified model for the growth of a population is studied in which random effects arise because reproducing individuals have a certain probability of surviving until the next breeding season and hence contributing to the next generation.…

Populations and Evolution · Quantitative Biology 2016-04-05 Henry C. Tuckwell

The question as to why most higher organisms reproduce sexually has remained open despite extensive research, and has been called "the queen of problems in evolutionary biology". Theories dating back to Weismann have suggested that the key…

Populations and Evolution · Quantitative Biology 2015-09-04 Andrew Lewis-Pye , Antonio Montalban

We consider a class of stochastic growth models on the integer lattice which includes various interesting examples such as the number of open paths in oriented percolation and the binary contact path process. Under some mild assumptions, we…

Probability · Mathematics 2019-07-05 Ryoki Fukushima , Nobuo Yoshida

According to the "hard-steps" model, the origin of humanity required "successful passage through a number of intermediate steps" (so-called "hard" or "critical" steps) that were intrinsically improbable with respect to the total time…

Populations and Evolution · Quantitative Biology 2025-02-18 Daniel B. Mills , Jennifer L. Macalady , Adam Frank , Jason T. Wright

Darwinian evolution is driven by random mutations, genetic recombination (gene shuffling) and selection that favors genotypes with high fitness. For systems where each genotype can be represented as a bitstring of length $L$, an overview of…

Populations and Evolution · Quantitative Biology 2023-04-11 Kristina Crona , Joachim Krug , Malvika Srivastava

Biological evolution can be conceptualized as a search process in the space of gene sequences guided by the fitness landscape, a mapping that assigns a measure of reproductive value to each genotype. Here we discuss probabilistic models of…

Populations and Evolution · Quantitative Biology 2024-04-10 Joachim Krug , Daniel Oros

A tendency in biological theorizing is to formulate principles above or equal to Evolution by Variation and Selection of Darwin and Wallace. In this letter I analyze one such recent proposal which did so for the developmental ascendency. I…

Populations and Evolution · Quantitative Biology 2007-08-08 P Ao

We present an analysis of six deterministic models for epidemic spreading. The evolution of the number of individuals of each class is given by ordinary differential equations of the first order in time, which are set up by using the laws…

Biological Physics · Physics 2020-12-25 Tânia Tomé , Mário J. de Oliveira

The process of `Evolutionary Diffusion', i.e. reproduction with local mutation but without selection in a biological population, resembles standard Diffusion in many ways. However, Evolutionary Diffusion allows the formation of local peaks…

Populations and Evolution · Quantitative Biology 2007-05-23 Daniel John Lawson , Henrik Jeldtoft Jensen

We study a class of stochastic evolution equations of jump type with random coefficients and its optimal control problem. There are three major ingredients. The first is to prove the existence and uniqueness of the solutions by continuous…

Optimization and Control · Mathematics 2016-10-18 Maoning Tang , Qingxin Meng

We discuss stochastic dynamics of populations of individuals playing games. Our models possess two evolutionarily stable strategies: an efficient one, where a population is in a state with the maximal payoff (fitness) and a risk-dominant…

Populations and Evolution · Quantitative Biology 2007-05-23 Jacek Miekisz

An overwhelming majority of humans are right-handed. Numerous explanations for individual handedness have been proposed, but this population-level handedness remains puzzling. Here we use a minimal mathematical model to explain this…

Populations and Evolution · Quantitative Biology 2015-04-07 Daniel M. Abrams , Mark J. Panaggio

Machine Learning techniques have been used to teach computer programs how to play games as complicated as Chess and Go. These were achieved using powerful tools such as Neural Networks and Parallel Computing on Supercomputers. In this…

Populations and Evolution · Quantitative Biology 2017-12-01 Pedro M. F. Pereira

Theoretical analysis proves that human survivability is dominated by an unusual physical, rather than biological, mechanism, which yields an exact law. The law agrees with all experimental data, but, contrary to existing theories, it is the…

Biological Physics · Physics 2009-11-07 Mark Ya. Azbel'

We consider a stochastic model of population dynamics where each individual is characterised by a trait in {0,1,...,L} and has a natural reproduction rate, a logistic death rate due to age or competition and a probability of mutation…

Probability · Mathematics 2019-02-12 Anton Bovier , Loren Coquille , Charline Smadi