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Synthetic lipid membranes in the absence of proteins can display quantized conduction events for ions that are virtually indistinguishable from those of protein channel. By indistinguishable we mean that one cannot decide based on the…

Biological Physics · Physics 2014-02-03 Lars D. Mosgaard , Thomas Heimburg

Serotonergic, noradrenergic and dopaminergic brainstem (including midbrain) neurons, often exhibit spontaneous and fairly regular spiking with frequencies of order a few Hz, though dopaminergic and noradrenergic neurons only exhibit such…

Neurons and Cognition · Quantitative Biology 2017-04-18 Henry C. Tuckwell , Ying Zhou , Nicholas J. Penington

Ion channels are specific proteins present in the membranes of living cells. They control the flow of specific ions through a cell, initiated by an ion channel's electrochemical gradient. In doing so, they control important physiological…

Subcellular Processes · Quantitative Biology 2012-09-14 Andrew Das Arulsamy

Intraocular pressure, resulting from the balance of aqueous humor (AH) production and drainage, is the only approved treatable risk factor in glaucoma. AH production is determined by the concurrent function of ionic pumps and aquaporins in…

Quantitative Methods · Quantitative Biology 2019-07-24 Lorenzo Sala , Aurelio Giancarlo Mauri , Riccardo Sacco , Dario Messenio , Giovanna Guidoboni , Alon Harris

We report an experimental study of the influences of the fixed charge and bulk ionic concentrations on the conduction of biological ion channels, and we consider the results within the framework of the ionic Coulomb blockade model of…

Subcellular Processes · Quantitative Biology 2016-12-09 I. Kh. Kaufman , O. A. Fedorenko , D. G. Luchinsky , W. A. T. Gibby , S. K. Roberts. P. V. E. McClintock , R. S. Eisenberg

We consider an exactly tractable model of the Kramers type for the voltage-dependent gating dynamics of single ion channels. It is assumed that the gating dynamics is caused by the thermally activated transitions in a bistable potential.…

Biological Physics · Physics 2009-11-11 Igor Goychuk , Peter Hanggi

Fluidic iontronics offer a unique capability for emulating the chemical processes found in neurons. We extract multiple distinct chemically regulated synaptic features from an experimentally accessible conical microfluidic channel carrying…

Soft Condensed Matter · Physics 2026-02-13 T. M. Kamsma , M. S. Klop , W. Q. Boon , C. Spitoni , B. Rueckauer , R. van Roij

Networks of channels conveying particles are often subject to blockages due to the limited carrying capacity of the individual channels. If the channels are coupled, blockage of one causes an increase in the flux entering the remaining open…

Statistical Mechanics · Physics 2019-06-28 Chloé Barré , Gregory Page , Julian Talbot , Pascal Viot

Spiking Neural Networks have earned increased recognition in recent years owing to their biological plausibility and event-driven computation. Spiking neurons are the fundamental building components of Spiking Neural Networks. Those neurons…

Neural and Evolutionary Computing · Computer Science 2025-06-04 Amr Nabil , T. Nandha Kumar , Haider Abbas F. Almurib

We present a simple one-dimensional trapping model prompted by the problem of ion current across biological membranes. The trap is modeled mimicking the ionic channel membrane behaviour. Such voltage-sensitive channels are open or closed…

Statistical Mechanics · Physics 2009-10-31 Alejandro D. Sanchez , Jorge A. Revelli , Horacio S. Wio

The local phonon modes in a Coulomb crystal of trapped ions can represent a Hubbard system of coupled bosons. We selectively prepare single excitations at each site and observe free hopping of a boson between sites, mediated by the…

Quantum Physics · Physics 2018-02-21 S. Debnath , N. M. Linke , S. -T. Wang , C. Figgatt , K. A. Landsman , L. -M. Duan , C. Monroe

We describe a simple conductance-based model neuron that includes intra- and extra-cellular ion concentration dynamics and show that this model exhibits periodic bursting. The bursting arises as the fast spiking behavior of the neuron is…

Cell Behavior · Quantitative Biology 2011-09-22 Ernest Barreto , John R. Cressman

Synchronized oscillations in networks of inhibitory and excitatory coupled bursting neurons are common in a variety of neural systems from central pattern generators to human brain circuits. One example of the latter is the subcortical…

Neurons and Cognition · Quantitative Biology 2011-09-21 Choongseok Park , Leonid L. Rubchinsky

Ion transport through narrow water--filled channels is impeded by a high electrostatic barrier. The latter originates from the large ratio of the dielectric constants of the water and a surrounding media. We show that ``doping'', i.e.…

Soft Condensed Matter · Physics 2009-11-11 J. Zhang , A. Kamenev , B. I. Shklovskii

Synchronized rhythmic oscillatory activity in the beta frequency band in the basal ganglia (BG) is a hallmark of Parkinson's disease (PD). Recent experiments and theoretical studies have demonstrated the crucial roles of T-type and L-type…

Neurons and Cognition · Quantitative Biology 2026-01-09 Choongseok Park , Leonid L. Rubchinsky , Sungwoo Ahn

The opening or closing mechanism of a voltage-gated ion channel is triggered by the potential difference crossing the cell membrane in the nervous system. Based on this picture, we model the ion channel as a nanoscale two-terminal ionic…

Biological Physics · Physics 2024-11-21 Yu-Juan Sun , Wei-Min Zhang

Our brain is a complex information processing network in which the nervous system receives information from the environment to quickly react to incoming events or learns from experience to sharp our memory. In the nervous system, the brain…

Neurons and Cognition · Quantitative Biology 2022-06-20 Thi Kim Thoa Thieu , Roderick Melnik

Inhibition is considered to shape neural activity, and broaden its pattern repertoire. In the sensory organs, where the anatomy of neural circuits is highly structured, lateral inhibition sharpens contrast among stimulus properties. The…

Neurons and Cognition · Quantitative Biology 2018-09-18 Netta Haroush , Shimon Marom

Brains can process sensory information from different modalities at astonishing speed; this is surprising as the integration of inputs through the membrane of each individual neuron already causes a delayed response. Neuronal recordings…

Neurons and Cognition · Quantitative Biology 2024-08-20 Simon Brandt , Mihai Alexandru Petrovici , Walter Senn , Katharina Anna Wilmes , Federico Benitez

Travelling waves of neural firing activity are observed in brain tissue as a part of various sensory, motor and cognitive processes. They represent an object of major interest in the study of excitable networks, with analysis conducted in…

Neurons and Cognition · Quantitative Biology 2025-11-10 Henry D. J. Kerr , Peter Ashwin , Kyle C. A. Wedgwood