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Consider the problem of finding high dimensional approximate nearest neighbors, where the data is generated by some known probabilistic model. We will investigate a large natural class of algorithms which we call bucketing codes. We will…

Information Theory · Computer Science 2016-11-17 Moshe Dubiner

In this paper, we study the static cell probe complexity of non-adaptive data structures that maintain a subset of $n$ points from a universe consisting of $m=n^{1+\Omega(1)}$ points. A data structure is defined to be non-adaptive when the…

Data Structures and Algorithms · Computer Science 2024-04-19 Giuseppe Persiano , Kevin Yeo

In-place associative integer sorting technique was proposed for integer lists which requires only constant amount of additional memory replacing bucket sort, distribution counting sort and address calculation sort family of algorithms.…

Data Structures and Algorithms · Computer Science 2012-09-24 A. Emre Cetin

Tables are ubiquitous across various domains for concisely representing structured information. Empowering large language models (LLMs) to reason over tabular data represents an actively explored direction. However, since typical LLMs only…

Computation and Language · Computer Science 2024-10-21 Jia-Nan Li , Jian Guan , Wei Wu , Zhengtao Yu , Rui Yan

For a linear Hamming metric code of length n over a finite field, the number of distinct weights of its codewords is at most n. The codes achieving the equality in the above bound were called full weight spectrum codes. In this paper we…

Information Theory · Computer Science 2024-05-31 Chiara Castello , Olga Polverino , Ferdinando Zullo

Given two sequences $A[1..n]$ and $B[1..m]$ over a totally ordered alphabet, the \emph{Longest Common Bitonic Subsequence} (LCBS) problem asks for a longest common subsequence that is strictly increasing up to a single peak element and…

Data Structures and Algorithms · Computer Science 2026-01-15 Md. Tanzeem Rahat , Md. Manzurul Hasan

Bille and G{\o}rtz (2011) recently introduced the problem of substring range counting, for which we are asked to store compactly a string $S$ of $n$ characters with integer labels in ([0, u]), such that later, given an interval ([a, b]) and…

Data Structures and Algorithms · Computer Science 2012-02-16 Travis Gagie , Paweł Gawrychowski

We generalized to higher dimensions the notions of optical orthogonal codes. We establish uper bounds on the capacity of general $ n $-dimensional OOCs, and on specific types of ideal codes (codes with zero off-peak autocorrelation). The…

Combinatorics · Mathematics 2022-07-18 Tim Alderson

We consider the problem of indexing a string $t$ of length $n$ to report the occurrences of a query pattern $p$ containing $m$ characters and $j$ wildcards. Let $occ$ be the number of occurrences of $p$ in $t$, and $\sigma$ the size of the…

Data Structures and Algorithms · Computer Science 2012-09-07 Philip Bille , Inge Li Goertz , Hjalte Wedel Vildhøj , Søren Vind

The Bandwidth Problem seeks for a simultaneous permutation of the rows and columns of the adjacency matrix of a graph such that all nonzero entries are as close as possible to the main diagonal. This work focuses on investigating novel…

Optimization and Control · Mathematics 2021-07-07 Franz Rendl , Renata Sotirov , Christian Truden

This paper initializes the study of {\em range subgraph counting} and {\em range subgraph listing}, both of which are motivated by the significant demands in practice to perform graph analytics on subgraphs pertinent to only selected, as…

Data Structures and Algorithms · Computer Science 2023-01-10 Shiyuan Deng , Shangqi Lu , Yufei Tao

Optimal prefix codes are studied for pairs of independent, integer-valued symbols emitted by a source with a geometric probability distribution of parameter $q$, $0{<}q{<}1$. By encoding pairs of symbols, it is possible to reduce the…

Information Theory · Computer Science 2013-01-08 Frédérique Bassino , Julien Clément , Gadiel Seroussi , Alfredo Viola

A necklace is an equivalence class of words of length $n$ over an alphabet under the cyclic shift (rotation) operation. As a classical object, there have been many algorithmic results for key operations on necklaces, including counting,…

Combinatorics · Mathematics 2021-11-08 Duncan Adamson , Argyrios Deligkas , Vladimir V. Gusev , Igor Potapov

We propose a list-decoding scheme for reconstruction codes in the context of uniform-tandem-duplication noise, which can be viewed as an application of the associative memory model to this setting. We find the uncertainty associated with…

Information Theory · Computer Science 2021-06-30 Yonatan Yehezkeally , Moshe Schwartz

This work concerns an alignment problem that has applications in many geospatial problems such as resource allocation and building reliable disease maps. Here, we introduce the problem of optimally aligning $k$ collections of $m$ spatial…

Data Structures and Algorithms · Computer Science 2024-11-14 Emma L. McDaniel , Armin R. Mikler , Chetan Tiwari , Murray Patterson

In this paper, we study the following problem: given $n$ subsets $S_1, \dots, S_n$ of an integer universe $U = \{0,\dots, u-1\}$, having total cardinality $N = \sum_{i=1}^n |S_i|$, find a prefix-free encoding $enc : U \rightarrow \{0,1\}^+$…

Data Structures and Algorithms · Computer Science 2025-04-16 Jarno N. Alanko , Ruben Becker , Davide Cenzato , Travis Gagie , Sung-Hwan Kim , Bojana Kodric , Nicola Prezza

Two recent lower bounds on the compressibility of repetitive sequences, $\delta \le \gamma$, have received much attention. It has been shown that a length-$n$ string $S$ over an alphabet of size $\sigma$ can be represented within the…

Data Structures and Algorithms · Computer Science 2023-11-10 Tomasz Kociumaka , Gonzalo Navarro , Francisco Olivares

In this paper we define a new problem, motivated by computational biology, $LCSk$ aiming at finding the maximal number of $k$ length $substrings$, matching in both input strings while preserving their order of appearance. The traditional…

Data Structures and Algorithms · Computer Science 2014-02-11 Gary Benson , Avivit Levy , Riva Shalom

When choosing between options, we must associate their values with the action needed to select them. We hypothesize that the brain solves this binding problem through neural population subspaces. To test this hypothesis, we examined…

Neurons and Cognition · Quantitative Biology 2023-09-15 W. Jeffrey Johnston , Justin M. Fine , Seng Bum Michael Yoo , R. Becket Ebitz , Benjamin Y. Hayden

Driven by the need for better models that allow one to shed light into the question how life's diversity has evolved, phylogenetic networks have now joined phylogenetic trees in the center of phylogenetics research. Like phylogenetic trees,…

Combinatorics · Mathematics 2016-10-04 Philippe Gambette , Katharina T. Huber