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During the last decade, network approaches became a powerful tool to describe protein structure and dynamics. Here we review the links between disordered proteins and the associated networks, and describe the consequences of local,…

In complex networks, the rich-get-richer effect (nodes with high degree at one point in time gain more degree in their future) is commonly observed. In practice this is often studied on a static network snapshot, for example, a preferential…

Social and Information Networks · Computer Science 2025-02-05 Matthew Russell Barnes , Vincenzo Nicosia , Richard G. Clegg

Redundancy needs more precise characterization as it is a major factor in the evolution and robustness of networks of multivariate interactions. We investigate the complexity of such interactions by inferring a connection transitivity that…

Social and Information Networks · Computer Science 2021-10-25 Tiago Simas , Rion Brattig Correia , Luis M. Rocha

Expressivity plays a fundamental role in evaluating deep neural networks, and it is closely related to understanding the limit of performance improvement. In this paper, we propose a three-pipeline training framework based on critical…

Machine Learning · Computer Science 2020-12-17 Gege Zhang

The exploration of brain networks has reached an important milestone as relatively large and reliable information has been gathered for connectomes of different species. Analyses of connectome data sets reveal that the structural length and…

Biological Physics · Physics 2025-04-03 Michelle T. Cirunay , Rene C. Batac , Géza Odór

Graph theory is now becoming a standard tool in system-level neuroscience. However, endowing observed brain anatomy and dynamics with a complex network structure does not entail that the brain actually works as a network. Asking whether the…

Neurons and Cognition · Quantitative Biology 2024-12-24 D. Papo , J. M. Buldú

Social networks influence health-related behaviors, such as obesity and smoking. While researchers have studied social networks as a driver for diffusion of influences and behaviors, it is less understood how the structure or topology of…

Social and Information Networks · Computer Science 2019-06-19 Suwen Lin , Louis Faust , Pablo Robles-Granda , Nitesh V. Chawla

As more connectome data become available, the question of how to best analyse the structure of biological neural networks becomes increasingly pertinent. In brain networks, knowing that two areas are connected is often not sufficient, as…

Neurons and Cognition · Quantitative Biology 2024-01-30 Tanguy Fardet , Emmanouil Giannakakis , Lukas Paulun , Anna Levina

Large-scale structural patterns commonly occur in network models of complex systems including a skewed node degree distribution and small-world topology. These patterns suggest common organizational constraints and similar functional…

Populations and Evolution · Quantitative Biology 2011-04-04 Stuart R. Borrett , Brian D. Fath , Bernard C. Patten

Modular structure is ubiquitous among real-world networks from related proteins to social groups. Here we analyze the modular organization of brain networks at a large-scale (voxel level) extracted from functional magnetic resonance imaging…

Data Analysis, Statistics and Probability · Physics 2009-04-16 M. Valencia , M. A. Pastor , MA. Fernandez-Seara , J. Artieda , J. Martinerie , M. Chavez

In the last decade, network science has shed new light both on the structural (anatomical) and on the functional (correlations in the activity) connectivity among the different areas of the human brain. The analysis of brain networks has…

Physics and Society · Physics 2017-04-18 Federico Battiston , Vincenzo Nicosia , Mario Chavez , Vito Latora

Brain function emerges from coordinated activity across anatomically connected regions, where structural connectivity (SC) -- the network of white matter pathways - provides the physical substrate for functional connectivity (FC) -- the…

Neurons and Cognition · Quantitative Biology 2025-07-09 Sam Frank Kelemen , Joaquín Gõni , Sérgio Pequito , Arian Ashourvan

Exploring the structural topology of genome-based large-scale metabolic network is essential for investigating possible relations between structure and functionality. Visualization would be helpful for obtaining immediate information about…

Molecular Networks · Quantitative Biology 2007-09-06 Zhao Jing , Tao Lin , Yu Hong , Luo Jian-Hua , Z. W. Cao , Li Yixue

The rich-club phenomenon, which provides information about the association between nodes, is a useful method to study the hierarchy structure of networks. In this work, we explore the behavior of rich-club coefficient (RCC) in scale-free…

Physics and Society · Physics 2024-12-03 Zhihang Liu , Wei Li , Yuxiang Yang

Despite the rapid pace at which deep networks are improving on standardized vision benchmarks, they are still outperformed by humans on real-world vision tasks. One solution to this problem is to make deep networks more brain-like. Although…

Computer Vision and Pattern Recognition · Computer Science 2025-12-12 Niranjan Rajesh , Georgin Jacob , SP Arun

Intrinsic brain activity is characterized by highly structured co-activations between different regions, whose origin is still under debate. In this paper, we address the question whether it is possible to unveil how the underlying…

Empirical studies over the past two decades have supported the hypothesis that schizophrenia is characterized by altered connectivity patterns in functional brain networks. These alterations have been proposed as genetically-mediated…

Neurons and Cognition · Quantitative Biology 2013-06-28 Felix Siebenhuhner , Shennan A. Weiss , Richard Coppola , Daniel R. Weinberger , Danielle S. Bassett

The structure of the majority of modern deep neural networks is characterized by uni- directional feed-forward connectivity across a very large number of layers. By contrast, the architecture of the cortex of vertebrates contains fewer…

Machine Learning · Computer Science 2017-06-23 Sebastian Herzog , Christian Tetzlaff , Florentin Wörgötter

Early sensory deprivation such as blindness or deafness shapes brain development in multiple ways. While it is established that deprived brain areas start to be engaged in the processing of stimuli from the remaining modalities and in…

Deep neural networks proved to be a very useful and powerful tool with many practical applications. They especially excel at learning from large data sets with labeled samples. However, in order to achieve good learning results, the network…

Neural and Evolutionary Computing · Computer Science 2018-01-03 Włodzimierz Funika , Paweł Koperek