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Boolean expressions are major focus of specifications and they are very much prone to introduction of faults, this survey presents various fault based testing techniques. It identifies that the techniques differ in their fault detection…

Software Engineering · Computer Science 2012-02-23 Usha Badhera , G. N. Purohit , S. Taruna

Cancer forms a robust system and progresses as stages over time typically with increasing aggressiveness and worsening prognosis. Characterizing these stages and identifying the genes driving transitions between them is critical to…

Molecular Networks · Quantitative Biology 2014-02-04 Sriganesh Srihari , Venkatesh Raman , Hon Wai Leong , Mark A. Ragan

Control problem in a biological system is the problem of finding an interventional policy for changing the state of the biological system from an undesirable state, e.g. disease, into a desirable healthy state. Boolean networks are utilized…

Molecular Networks · Quantitative Biology 2016-09-07 Mohammad Moradi , Sama Goliaei

The concept of control is crucial for effectively understanding and applying biological network models. Key structural features relate to control functions through gene regulation, signaling, or metabolic mechanisms, and computational…

Molecular Networks · Quantitative Biology 2024-11-05 David Murrugarra , Alan Veliz-Cuba , Elena Dimitrova , Claus Kadelka , Matthew Wheeler , Reinhard Laubenbacher

Understanding control mechanisms in biological systems plays a crucial role in important applications, for instance in cell reprogramming. Boolean modeling allows the identification of possible efficient strategies, helping to reduce the…

Molecular Networks · Quantitative Biology 2021-12-21 Laura Cifuentes-Fontanals , Elisa Tonello , Heike Siebert

The aim of this paper is to propose an alternative method to solve a Fault Tolerant Control problem. The model is a linear system affected by a disturbance term: this represents a large class of technological faulty processes. The goal is…

Optimization and Control · Mathematics 2010-11-15 Sophie M. Fosson

Motivation: Many problems in biomedicine and other areas of the life sciences can be characterized as control problems, with the goal of finding strategies to change a disease or otherwise undesirable state of a biological system into…

Molecular Networks · Quantitative Biology 2016-10-04 David Murrugarra , Alan Veliz-Cuba , Boris Aguilar , Reinhard Laubenbacher

In a previous article, an algorithm for identifying therapeutic targets in Boolean networks modeling pathological mechanisms was introduced. In the present article, the improvements made on this algorithm, named kali, are described. These…

Molecular Networks · Quantitative Biology 2018-03-13 Arnaud Poret , Carito Guziolowski

Computational models of biological processes provide one of the most powerful methods for a detailed analysis of the mechanisms that drive the behavior of complex systems. Logic-based modeling has enhanced our understanding and…

Molecular Networks · Quantitative Biology 2022-02-08 John Zobolas , Pedro T. Monteiro , Martin Kuiper , Åsmund Flobak

Multi-mode systems can operate in different modes, leading to large numbers of different dynamics. Consequently, applying traditional structural diagnostics to such systems is often untractable. To address this challenge, we present a…

Logic in Computer Science · Computer Science 2023-12-22 Fatemeh Hashemniya , Benoït Caillaud , Erik Frisk , Mattias Krysander , Mathias Malandain

Fault-tolerant distributed algorithms are central for building reliable spatially distributed systems. Unfortunately, the lack of a canonical precise framework for fault-tolerant algorithms is an obstacle for both verification and…

Formal Languages and Automata Theory · Computer Science 2012-10-16 Annu John , Igor Konnov , Ulrich Schmid , Helmut Veith , Josef Widder

Large Language Model (LLM)-based systems present new opportunities for autonomous health monitoring in sensor-rich industrial environments. This study explores the potential of LLMs to detect and classify faults directly from sensor data,…

Artificial Intelligence · Computer Science 2025-09-30 Xian Yeow Lee , Lasitha Vidyaratne , Ahmed Farahat , Chetan Gupta

This paper presents the design of a diagnosis system for the detection, identification and reconstruction of faults in pipelines. The design of such diagnosis system is based on redundant relations and nonlinear observers, taking into…

Optimization and Control · Mathematics 2017-06-21 L. Torres

The vast amount of sequencing data presently available allow the scientific community to explore a range of genetic variables that may drive and progress cancer. A myriad of predictive tools has been proposed, allowing researchers and…

Genomics · Quantitative Biology 2023-03-31 Mona Nourbakhsh , Kristine Degn , Astrid Saksager , Matteo Tiberti , Elena Papaleo

This paper introduces an integrated system designed to enhance the explainability of fault diagnostics in complex systems, such as nuclear power plants, where operator understanding is critical for informed decision-making. By combining a…

Artificial Intelligence · Computer Science 2024-02-13 Akshay J. Dave , Tat Nghia Nguyen , Richard B. Vilim

The metabolic wiring of patient cells is altered drastically in many diseases, including cancer. Understanding the nature of such changes may pave the way for new therapeutic opportunities, as well as the development of personalized…

Molecular Networks · Quantitative Biology 2020-02-12 Ali Cakmak , M. Hasan Celik

Single fault sequential change point problems have become important in modeling for various phenomena in large distributed systems, such as sensor networks. But such systems in many situations present multiple interacting faults. For…

Information Theory · Computer Science 2015-03-17 Ram Rajagopal , XuanLong Nguyen , Sinem Coleri Ergen , Pravin Varaiya

A Boolean network is a discrete dynamical system operating on vectors of Boolean variables. The action of a Boolean network can be conveniently expressed as a system of Boolean update functions, computing the new values for each component…

Formal Languages and Automata Theory · Computer Science 2023-03-02 Artiom Alhazov , Vincent Ferrari-Dominguez , Rudolf Freund , Nicolas Glade , Sergiu Ivanov

Large language models (LLMs) have emerged as powerful tools for analyzing complex datasets. Recent studies demonstrate their potential to generate useful, personalized responses when provided with patient-specific health information that…

This paper deals with diagnosability of discrete-time nonlinear systems with unknown inputs and quantized outputs. We propose a novel notion of diagnosability that we term approximate diagnosability, corresponding to the possibility of…

Optimization and Control · Mathematics 2017-04-10 Elena De Santis , Giordano Pola , Maria Domenica Di Benedetto
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