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Breast cancer cell lines are indispensable tools for unraveling disease mechanisms, enabling drug discovery, and developing personalized treatments, yet their heterogeneity and inconsistent classification pose significant challenges in…

A new analytical framework consisting of two phenomena: single sample and multiple samples, is proposed to deal with the identification problem of Boolean control networks (BCNs) systematically and comprehensively. Under this framework, the…

Systems and Control · Electrical Eng. & Systems 2021-04-30 Biao Wang , Jun-e Feng , Daizhan Cheng

Target identification, one of the steps of drug discovery, aims at identifying biomolecules whose function should be therapeutically altered in order to cure the considered pathology. This work proposes an algorithm for in silico target…

Molecular Networks · Quantitative Biology 2015-05-26 Arnaud Poret , Jean-Pierre Boissel

Complex systems often exhibit unexpected faults that are difficult to handle. Such systems are desirable to be diagnosable, i.e. faults can be automatically detected as they occur (or shortly afterwards), enabling the system to handle the…

Software Engineering · Computer Science 2015-02-27 Hernán Ponce de León , Gonzalo Bonigo , Laura Brandán Briones

Revealing relationships between genes and disease phenotypes is a critical problem in biomedical studies. This problem has been challenged by the heterogeneity of diseases. Patients of a perceived same disease may form multiple subgroups,…

Methodology · Statistics 2022-11-30 Yifan Sun , Ziye Luo , Xinyan Fan

This paper proposes a novel framework for active fault diagnosis and parameter estimation in linear systems operating in closed-loop, subject to unknown but bounded faults. The approach integrates set-membership identification with a cost…

Optimization and Control · Mathematics 2025-08-19 Annalena Daniels , Johannes Teutsch , Fabian Kleindienst , Marion Leibold , Dirk Wollherr

Large-scale decentralized systems of autonomous agents interacting via asynchronous communication often experience the following self-healing dilemma: fault detection inherits network uncertainties making a remote faulty process…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-06-25 Jovan Nikolic , Nursultan Jubatyrov , Evangelos Pournaras

This paper deals with the problem of designing a distributed fault detection and isolation algorithm for nonlinear large-scale systems that are subjected to multiple fault modes. To solve this problem, a network of communicating detection…

Systems and Control · Computer Science 2016-09-27 Elaheh Noursadeghi , Ioannis Raptis

Biological systems are often modeled as a system of ordinary differential equations (ODEs) with time-invariant parameters. However, cell signaling events or pharmacological interventions may alter the cellular state and induce multi-mode…

Quantitative Methods · Quantitative Biology 2020-04-28 Bing Liu

Complex systems are naturally hybrid: their dynamic behavior is both continuous and discrete. For these systems, maintenance and repair are an increasing part of the total cost of final product. Efficient diagnosis and prognosis techniques…

Systems and Control · Computer Science 2013-08-27 Elodie Chanthery , Pauline Ribot

This paper presents a novel method for assessing multiple fault diagnosability and detectability of nonlinear parametrized dynamical models. This method is based on computer algebra algorithms which return precomputed values of algebraic…

Dynamical Systems · Mathematics 2018-07-10 Nathalie Verdière , Sébastien Orange

Autonomously detecting and recovering from faults is one approach for reducing the operational complexity and costs associated with managing computing environments. We present a novel methodology for autonomously generating investigation…

Artificial Intelligence · Computer Science 2015-01-08 Chris Schneider , Adam Barker , Simon Dobson

Machine learning (ML) offers a collection of powerful approaches for detecting and modeling associations, often applied to data having a large number of features and/or complex associations. Currently, there are many tools to facilitate…

This paper presents a methodology for model based robust fault diagnosis and a methodology for input design to obtain optimal diagnosis of faults. The proposed algorithm is suitable for real time implementation. Issues of robustness are…

Systems and Control · Computer Science 2020-01-16 Dhruv Khandelwal , Siep Weiland , Amol Khalate

Fault diagnosis of dynamic systems is done by detecting changes in time-series data, for example residuals, caused by system degradation and faulty components. The use of general-purpose multi-class classification methods for fault…

Machine Learning · Statistics 2022-08-15 Andreas Lundgren , Daniel Jung

In the applications of Boolean networks to modeling biological systems, an important computational problem is the detection of the fixed points of these networks. This is an NP-complete problem in general. There have been various attempts…

Quantitative Methods · Quantitative Biology 2014-04-23 Yi Ming Zou

The concept of personalised medicine in cancer therapy is becoming increasingly important. There already exist drugs administered specifically for patients with tumours presenting well-defined mutations. However, the field is still in its…

Biomolecules · Quantitative Biology 2024-08-26 Abbi Abdel-Rehim , Oghenejokpeme Orhobor , Gareth Griffiths , Larisa Soldatova , Ross D. King

Deep learning methods have shown promising performance in fault diagnosis for multimode process. Most existing studies assume that the collected health state categories from different operating modes are identical. However, in real…

Machine Learning · Computer Science 2025-10-30 Guangqiang Li , M. Amine Atoui , Xiangshun Li

Motivation: Identifying the molecular pathways more prone to disruption during a pathological process is a key task in network medicine and, more in general, in systems biology. Results: In this work we propose a pipeline that couples a…

In causal inference, interference occurs when the treatment of one unit may affect the outcomes of other units. The goal of this work is to serve as a guide to the use of linear outcome modeling for estimating causal effects in settings…

Methodology · Statistics 2026-04-01 Eric Tong , Salvador V. Balkus