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One of the classical questions in evolutionary biology is how evolutionary processes are coupled at the gene and species level. With this motivation, we compare the topological properties (mainly the depth scaling, as a characterization of…

Populations and Evolution · Quantitative Biology 2011-07-26 E. Alejandro Herrada , Víctor M. Eguíluz , Emilio Hernández-García , Carlos M. Duarte

Complex networks are ubiquitous: a cell, the human brain, a group of people and the Internet are all examples of interconnected many-body systems characterized by macroscopic properties that cannot be trivially deduced from those of their…

Geometrically frustrated assemblies where building blocks misfit have been shown to generate intriguing phenomena from self-limited growth, fiber formation, to structural complexity. We introduce a graph theory formulation of geometrically…

Soft Condensed Matter · Physics 2024-07-26 José M. Ortiz-Tavárez , Zhen Yang , Nicholas Kotov , Xiaoming Mao

Many classification problems consider classes that form a hierarchy. Classifiers that are aware of this hierarchy may be able to make confident predictions at a coarse level despite being uncertain at the fine-grained level. While it is…

Machine Learning · Computer Science 2023-02-13 Jack Valmadre

The network approach became a widely used tool to understand the behaviour of complex systems in the last decade. We start from a short description of structural rigidity theory. A detailed account on the combinatorial rigidity analysis of…

Biological Physics · Physics 2012-12-04 Merse E. Gaspar , Peter Csermely

A common trait of complex systems is that they can be represented by means of a network of interacting parts. It is, in fact, the network organisation (more than the parts) what largely conditions most higher-level properties, which are not…

Populations and Evolution · Quantitative Biology 2019-07-15 Ricard Sole , Sergi Valverde

Adaptive transport networks in biological and physical systems exhibit hierarchical organization, characteristic channel spacing, and robust scaling relations. Existing adaptive network models, formulated on a lattice, successfully…

Adaptation and Self-Organizing Systems · Physics 2026-05-18 Sidney Holden , Mia C. Morrell , Geoffrey Vasil , Eleni Katifori

We investigate the possible origin of hierarchical structures in complex systems describable in terms of a finite and small number of parameters which control the behavioral pattern at each level of organization. We argue that the…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Fariel Shafee

The primary building block of the body is collagen, which is found in the extracellular matrix and in many stress-bearing tissues such as tendon and cartilage. It provides elasticity and support to cells and tissues while influencing…

Biomolecules · Quantitative Biology 2019-07-29 Michael W. H. Kirkness , Kathrin Lehmann , Nancy R. Forde

Nature provides examples of self-assemble lightweight disordered network structures with remarkable mechanical properties which are desirable for many applications purposes but challenging to reproduce artificially. Previous experimental…

Soft Condensed Matter · Physics 2019-03-27 Daniel Rayneau-Kirkhope , Silvia Bonfanti , Stefano Zapperi

Hierarchy significantly shapes interactions in social structures by organizing individuals or groups based on status, power, or privilege. This study investigates how hierarchy affects structural balance as temperature variations, which…

Physics and Society · Physics 2025-04-25 Amir Kargaran , Houman Jafari , G. Reza Jafari

In this paper we explore the concept of hierarchy as a quantifiable descriptor of ordered structures, departing from the definition of three conditions to be satisfied for a hierarchical structure: {\em order}, {\em predictability} and {\em…

Data Analysis, Statistics and Probability · Physics 2011-03-24 Bernat Corominas-Murtra , Joaquín Goñi , Carlos Rodríguez-Caso , Ricard Solé

Athermal models of disordered fibrous networks are highly useful for studying the mechanics of elastic networks composed of stiff biopolymers. The underlying network architecture is a key aspect that can affect the elastic properties of…

Soft Condensed Matter · Physics 2016-01-20 Albert James Licup , Abhinav Sharma , Fred C. MacKintosh

Hierarchically modular organization is a canonical network topology that is evolutionarily conserved in the nervous systems of animals. Within the network, neurons form directional connections defined by the growth of their axonal…

Neurons and Cognition · Quantitative Biology 2024-04-26 Nobuaki Monma , Hideaki Yamamoto , Naoya Fujiwara , Hakuba Murota , Satoshi Moriya , Ayumi Hirano-Iwata , Shigeo Sato

This paper presents a novel framework for the modeling of biological networks. It makes use of recent tools analyzing the robust satisfaction of properties of (hybrid) dynamical systems. The main challenge of this approach as applied to…

Computational Engineering, Finance, and Science · Computer Science 2012-08-22 Nicolas Mobilia , Alexandre Donzé , Jean Marc Moulis , Éric Fanchon

In a complex system, the individual components are neither so tightly coupled or correlated that they can all be treated as a single unit, nor so uncorrelated that they can be approximated as independent entities. Instead, patterns of…

Populations and Evolution · Quantitative Biology 2015-09-15 Blake C. Stacey

The failure of mechanical metamaterials is a function of the interplay between the properties of the base material and the microstructural geometry. Stochastic failure properties of the base material and disordered microstructural…

Materials Science · Physics 2025-09-01 Sage Fulco , Prashant K. Purohit , Michal K. Budzik , Kevin T. Turner

Assessing the synthesizability of inorganic materials is a grand challenge for accelerating their discovery using computations. Synthesis of a material is a complex process that depends not only on its thermodynamic stability with respect…

The structural complexity of soft gels is at the origin of a versatile mechanical response that allows for large deformations, controlled elastic recovery and toughness in the same material. A limit to exploiting the potential of such…

Soft Condensed Matter · Physics 2017-10-06 Mehdi Bouzid , Emanuela Del Gado

When a biological system robustly corrects component-level errors, the direct pressure on component performance declines. Components may become less reliable, maintain more genetic variability, or drift neutrally in design, creating the…

Populations and Evolution · Quantitative Biology 2023-12-27 Steven A. Frank
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