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Models of complex networks often incorporate node-intrinsic properties abstracted as hidden variables. The probability of connections in the network is then a function of these variables. Real-world networks evolve over time, and many…

Physics and Society · Physics 2021-05-19 Harrison Hartle , Fragkiskos Papadopoulos , Dmitri Krioukov

The physics of behavior seeks simple descriptions of animal behavior. The field has advanced rapidly by using techniques in low dimensional dynamics distilled from computer vision. Yet, we still do not generally understand the rules which…

Biological Physics · Physics 2021-07-08 Matthew S. Bull , Manu Prakash

We present a Hamiltonian approach for the wellknown Eigen model of the Darwin selection dynamics. Hamiltonization is carried out by means of the embedding of the population variable space, describing behavior of the system, into the space…

Biological Physics · Physics 2009-10-30 A. V. Shapovalov , E. V. Evdokimov

Quantitative models of associative learning that explain the behavior of real animals with high precision have turned out very difficult to construct. We do this in the context of the dynamics of the thermal preference of C. elegans. For…

Biological Physics · Physics 2022-06-02 Ahmed Roman , Konstantine Palanski , Ilya Nemenman , William S Ryu

We show techniques of analyzing complex dynamics of cellular automata (CA) with chaotic behaviour. CA are well known computational substrates for studying emergent collective behaviour, complexity, randomness and interaction between order…

Cellular Automata and Lattice Gases · Physics 2012-03-29 Genaro J. Martinez , Andrew Adamatzky , Ramon Alonso-Sanz

We introduce a new class of latent process models for dynamic relational network data with the goal of detecting time-dependent structure. Network data are often observed over time, and static network models for such data may fail to…

Methodology · Statistics 2013-11-15 Lucy F. Robinson , Carey E. Priebe

Classical swarm models, exemplified by the Cucker--Smale framework, provide foundational insights into collective alignment but exhibit fundamental limitations in capturing the adaptive, heterogeneous behaviours intrinsic to living systems.…

Adaptation and Self-Organizing Systems · Physics 2025-09-08 Rene Fabregas , Jie Liao , Nisrine Outada

Discovering mathematical models that characterize the observed behavior of dynamical systems remains a major challenge, especially for systems in a chaotic regime. The challenge is even greater when the physics underlying such systems is…

Computational Physics · Physics 2023-12-25 Mario De Florio , Ioannis G. Kevrekidis , George Em Karniadakis

Brains and artificial neural networks compute with continuous variables such as object position or stimulus orientation. However, the complex variability in neural responses makes it difficult to link internal representational structure to…

Neurons and Cognition · Quantitative Biology 2026-03-12 Will Slatton , Chi-Ning Chou , SueYeon Chung

Empirical evidence suggesting that living systems might operate in the vicinity of critical points, at the borderline between order and disorder, has proliferated in recent years, with examples ranging from spontaneous brain activity to…

Statistical Mechanics · Physics 2014-07-25 Jorge Hidalgo , Jacopo Grilli , Samir Suweis , Miguel A. Munoz , Jayanth R. Banavar , Amos Maritan

Recent progress in the development of quantum technologies has enabled the direct investigation of dynamics of increasingly complex quantum many-body systems. This motivates the study of the complexity of classical algorithms for this…

Quantum Physics · Physics 2023-07-12 Dominik S. Wild , Álvaro M. Alhambra

We present a multidimensional data analysis framework for the analysis of ordinal response variables. Underlying the ordinal variables, we assume a continuous latent variable, leading to cumulative logit models. The framework includes…

Methodology · Statistics 2025-10-01 Mark de Rooij , Ligaya Breemer , Dion Woestenburg , Frank Busing

Many dynamical systems found in biology, ranging from genetic circuits to the human brain to human social systems, are inherently computational. Although extensive research has explored their resulting functions and behaviors, the…

Neurons and Cognition · Quantitative Biology 2025-04-15 Junang Li , Andrew M. Leifer , David H. Wolpert

We study the problem of modeling a non-linear dynamical system when given a time series by deriving equations directly from the data. Despite the fact that time series data are given as input, models for dynamics and estimation algorithms…

Machine Learning · Computer Science 2025-04-16 Ren Fujiwara , Yasuko Matsubara , Yasushi Sakurai

We perform an analytical investigation of the cell interface dynamics in the framework of a minimal phase field model of cell motility suggested in [1], which consists of two coupled evolution equations for the order parameter and a…

Biological Physics · Physics 2019-10-04 Mohammad Abu Hamed , Alexander A. Nepomnyashchy

Notwithstanding the usefulness of system dynamics in analyzing complex policy problems, policy design is far from straightforward and in many instances trial-and-error driven. To address this challenge, we propose to combine system dynamics…

Physics and Society · Physics 2017-11-15 Lukas Schoenenberger , Radu Tanase

Complex systems are typically characterized by intricate internal dynamics that are often hard to elucidate. Ideally, this requires methods that allow to detect and classify in unsupervised way the microscopic dynamical events occurring in…

Data Analysis, Statistics and Probability · Physics 2024-11-26 Matteo Becchi , Federico Fantolino , Giovanni M. Pavan

Modelling is an essential procedure in analyzing and controlling a given logical dynamic system (LDS). It has been proved that deterministic LDS can be modeled as a linear-like system using algebraic state space representation. However, due…

Optimization and Control · Mathematics 2022-03-04 Changxi Li , Jun-e Feng , Daizhan Cheng , Xiao Zhang

Proposed to study the dynamics of physiological systems in which the evolution depends on the state in a previous time, the Mackey-Glass model exhibits a rich variety of behaviors including periodic or chaotic solutions in vast regions of…

Disordered Systems and Neural Networks · Physics 2021-12-22 Juan P. Tarigo , Cecilia Stari , Cecilia Cabeza , Arturo C. Marti

We study hyperbolic systems of one-dimensional partial differential equations under general, possibly non-local boundary conditions. A large class of evolution equations, either on individual 1-dimensional intervals or on general networks,…

Analysis of PDEs · Mathematics 2021-01-19 Marjeta Kramar Fijavž , Delio Mugnolo , Serge Nicaise