English
Related papers

Related papers: DeepDiff: Deep-learning for predicting Differentia…

200 papers

This study suggests a new approach to EEG data classification by exploring the idea of using evolutionary computation to both select useful discriminative EEG features and optimise the topology of Artificial Neural Networks. An evolutionary…

Neural and Evolutionary Computing · Computer Science 2019-10-11 Jordan J. Bird , Diego R. Faria , Luis J. Manso , Anikó Ekárt , Christopher D. Buckingham

There has been significant recent interest towards achieving highly efficient deep neural network architectures. A promising paradigm for achieving this is the concept of evolutionary deep intelligence, which attempts to mimic biological…

Machine Learning · Computer Science 2016-11-23 Mohammad Javad Shafiee , Alexander Wong

For the past few years, deep generative models have increasingly been used in biological research for a variety of tasks. Recently, they have proven to be valuable for uncovering subtle cell phenotypic differences that are not directly…

Image and Video Processing · Electrical Eng. & Systems 2026-01-28 Anis Bourou , Thomas Boyer , Kévin Daupin , Véronique Dubreuil , Aurélie De Thonel , Valérie Mezger , Auguste Genovesio

Epigenetics encompasses mechanisms that can alter the expression of genes without changing the underlying genetic sequence. The epigenetic regulation of gene expression is initiated and sustained by several mechanisms such as DNA…

Genomics · Quantitative Biology 2025-04-08 Muhammad Tahir , Mahboobeh Norouzi , Shehroz S. Khan , James R. Davie , Soichiro Yamanaka , Ahmed Ashraf

Efficient inference on GPUs using large language models remains challenging due to memory bandwidth limitations, particularly during data transfers between High Bandwidth Memory (HBM) and SRAM in attention computations. Approximate…

Machine Learning · Computer Science 2025-06-06 Nirav Koley , Prajwal Singhania , Abhinav Bhatele

We introduce DiffKnock, a diffusion-based knockoff framework for high-dimensional feature selection with finite-sample false discovery rate (FDR) control. DiffKnock addresses two key limitations of existing knockoff methods: preserving…

Methodology · Statistics 2025-10-03 Heng Ge , Qing Lu

Splice sites play a crucial role in gene expression, and accurate prediction of these sites in DNA sequences is essential for diagnosing and treating genetic disorders. We address the challenge of splice site prediction by introducing…

Genomics · Quantitative Biology 2023-11-23 Asmita Poddar , Vladimir Uzun , Elizabeth Tunbridge , Wilfried Haerty , Alejo Nevado-Holgado

Supervised fine-tuning (SFT) is fundamental to adapting large language models, yet training on complete datasets incurs prohibitive costs with diminishing returns. Existing data selection methods suffer from severe domain specificity:…

Computation and Language · Computer Science 2026-02-02 Junyou Su , He Zhu , Xiao Luo , Liyu Zhang , Hong-Yu Zhou , Yun Chen , Peng Li , Yang Liu , Guanhua Chen

This manuscript delves into the intersection of genomics and phenotypic prediction, focusing on the statistical innovation required to navigate the complexities introduced by noisy covariates and confounders. The primary emphasis is on the…

Methodology · Statistics 2024-11-15 Upama Paul Chowdhury , Ronit Bhattacharjee , Susmita Das , Abhik Ghosh

A promising paradigm for achieving highly efficient deep neural networks is the idea of evolutionary deep intelligence, which mimics biological evolution processes to progressively synthesize more efficient networks. A crucial design factor…

Neural and Evolutionary Computing · Computer Science 2017-04-10 Mohammad Javad Shafiee , Elnaz Barshan , Alexander Wong

Discrete choice models are essential for modelling various decision-making processes in human behaviour. However, the specification of these models has depended heavily on domain knowledge from experts, and the fully automated but…

Machine Learning · Computer Science 2025-07-16 Fumiyasu Makinoshima , Tatsuya Mitomi , Fumiya Makihara , Eigo Segawa

Diverse human motion prediction (HMP) aims to predict multiple plausible future motions given an observed human motion sequence. It is a challenging task due to the diversity of potential human motions while ensuring an accurate description…

Computer Vision and Pattern Recognition · Computer Science 2024-09-04 Hua Yu , Yaqing Hou , Wenbin Pei , Qiang Zhang

Accurate load forecasting plays a vital role in numerous sectors, but accurately capturing the complex dynamics of dynamic power systems remains a challenge for traditional statistical models. For these reasons, time-series models (ARIMA)…

Neural and Evolutionary Computing · Computer Science 2024-02-06 Anuvab Sen , Arul Rhik Mazumder , Udayon Sen

Predicting phenotype from genotype is a central challenge in genetics. Traditional approaches in quantitative genetics typically analyze this problem using methods based on linear regression. These methods generally assume that the genetic…

Genomics · Quantitative Biology 2025-04-15 Krishna Rijal , Caroline M. Holmes , Samantha Petti , Gautam Reddy , Michael M. Desai , Pankaj Mehta

An accurate binding affinity prediction between T-cell receptors and epitopes contributes decisively to develop successful immunotherapy strategies. Some state-of-the-art computational methods implement deep learning techniques by…

Machine Learning · Computer Science 2024-01-18 Etienne Goffinet , Raghvendra Mall , Ankita Singh , Rahul Kaushik , Filippo Castiglione

Facial attribute classification relies on large-scale annotated datasets in which many traits, such as age and expression, are inherently ambiguous and continuous but are discretized into categorical labels. Annotation inconsistencies arise…

Computer Vision and Pattern Recognition · Computer Science 2026-03-09 Basudha Pal , Rama Chellappa

We present ConDiff, a novel dataset for scientific machine learning. ConDiff focuses on the parametric diffusion equation with space dependent coefficients, a fundamental problem in many applications of partial differential equations…

Machine Learning · Computer Science 2025-02-04 Vladislav Trifonov , Alexander Rudikov , Oleg Iliev , Yuri M. Laevsky , Ivan Oseledets , Ekaterina Muravleva

Fine-grained object classification is a challenging task due to the subtle inter-class difference and large intra-class variation. Recently, visual attention models have been applied to automatically localize the discriminative regions of…

Computer Vision and Pattern Recognition · Computer Science 2018-02-27 Bo Zhao , Xiao Wu , Jiashi Feng , Qiang Peng , Shuicheng Yan

Deep-learning models based on whole-slide digital pathology images (WSIs) become increasingly popular for predicting molecular biomarkers. Instance-based models has been the mainstream strategy for predicting genetic alterations using WSIs…

Quantitative Methods · Quantitative Biology 2022-06-02 Bangwei Guo , Xingyu Li , Miaomiao Yang , Hong Zhang , Xu Steven Xu

Time series forecasting is widely used in the fields of equipment life cycle forecasting, weather forecasting, traffic flow forecasting, and other fields. Recently, some scholars have tried to apply Transformer to time series forecasting…

Machine Learning · Computer Science 2022-02-24 Benhan Li , Shengdong Du , Tianrui Li