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We analyze the stochastic thermodynamics of systems with continuous space of states. The evolution equation, the rate of entropy production, and other results are obtained by a continuous time limit of a discrete time formulation. We point…

Statistical Mechanics · Physics 2020-08-27 Mário J. de Oliveira

We study a stochastic model of protein dynamics that explicitly includes delay in the degradation. We rigorously derive the master equation for the processes and solve it exactly. We show that the equations for the mean values obtained…

Statistical Mechanics · Physics 2013-05-29 Luis F. Lafuerza , Raul Toral

This paper deals with the analysis of stochastic systems which can be described by a Langevin equation. By the method presented in this paper drift and diffusion terms of the corresponding Fokker-Planck equation can be extracted from the…

Condensed Matter · Physics 2009-10-31 S. Siegert , R. Friedrich , J. Peinke

Chemical reactions in cell are subject to intense stochastic fluctuations. An important question is how the fundamental physiological behavior of cell is kept stable against those noisy perturbations. In this paper a stochastic model of…

Molecular Networks · Quantitative Biology 2009-11-13 Yurie Okabe , Masaki Sasai

For a model nonlinear dynamical system, we show how one may obtain its bifurcation behavior by introducing noise into the dynamics and then studying the resulting Langevin dynamics in the weak-noise limit. A suitable quantity to capture the…

Adaptation and Self-Organizing Systems · Physics 2019-02-06 Debraj Das , Sayan Roy , Shamik Gupta

We study general stochastic birth and death processes including delay. We develop several approaches for the analytical treatment of these non-Markovian systems, valid, not only for constant delays, but also for stochastic delays with…

Statistical Mechanics · Physics 2015-06-11 Luis F. Lafuerza , Raul Toral

We illustrate a counter-intuitive effect of an additive stochastic force, which acts independently on each element of an ensemble of globally coupled oscillators. We show numerically and semi-analytically that a very small white noise is…

Adaptation and Self-Organizing Systems · Physics 2017-06-27 Pau Clusella , Antonio Politi

A continuous train of irregularly spaced spikes, peculiar of homoclinic chaos, transforms into clusters of regularly spaced spikes, with quiescent periods in between (bursting regime), by feeding back a low frequency portion of the…

Chaotic Dynamics · Physics 2009-11-07 R. Meucci , A. Di Garbo , E. Allaria , F. T. Arecchi

Spiking neural networks implemented in dynamic neuromorphic processors are well suited for spatiotemporal feature detection and learning, for example in ultra low-power embedded intelligence and deep edge applications. Such pattern…

Neural and Evolutionary Computing · Computer Science 2020-02-17 Fredrik Sandin , Mattias Nilsson

We report on the origin of synchronized bursting dynamics in various networks of neural spiking oscillators, when a certain threshold in coupling strength is exceeded. These ensembles synchronize at relatively low coupling strength and lose…

Chaotic Dynamics · Physics 2007-05-23 Mikhail V. Ivanchenko , Grigory V. Osipov , Vladimir D. Shalfeev , Jurgen Kurths

We study a problem of designing ``robust'' external excitations for control and synchronization of an assembly of homotypic harmonic oscillators representing so-called theta neurons. The model of theta neurons (Theta model) captures, in…

Optimization and Control · Mathematics 2024-09-23 Roman Chertovskih , Nikolay Pogodaev , Maxim Staritsyn , Joaquim Da Silva Sewane , Antonio Pedro Aguiar

The stationary distribution of a fully chaotic system typically exhibits a fractal structure, which dramatically changes if the dynamical equations are even slightly modified. Perturbative techniques are not expected to work in this…

Chaotic Dynamics · Physics 2017-06-26 Jeffrey M. Heninger , Domenico Lippolis , Predrag Cvitanovic

Starting from the developed generalized point process model of $1/f$ noise (B. Kaulakys et al, Phys. Rev. E 71 (2005) 051105; cond-mat/0504025) we derive the nonlinear stochastic differential equations for the signal exhibiting 1/f^{\beta}$…

Statistical Mechanics · Physics 2009-11-11 Bronislovas Kaulakys , Julius Ruseckas , Vygintas Gontis , Miglius Alaburda

Spatial pattern formation in excitable fluctuating media was researched analytically from the point of view of the order parameters concept. The reaction-diffusion system in external noise is considered as a model of such medium. Stochastic…

Pattern Formation and Solitons · Physics 2017-03-16 Svetlana E. Kurushina , Valery V. Maximov , Yuri M. Romanovskii

The plasticity of the conduction delay between neurons plays a fundamental role in learning. However, the exact underlying mechanisms in the brain for this modulation is still an open problem. Understanding the precise adjustment of…

Neural and Evolutionary Computing · Computer Science 2020-11-19 Alireza Nadafian , Mohammad Ganjtabesh

A common model of stochastic auto-regulatory gene expression describes promoter switching via cooperative protein binding, effective protein production in the active state and dilution of proteins. Here we consider an extension of this…

Subcellular Processes · Quantitative Biology 2020-04-07 James Holehouse , Abhishek Gupta , Ramon Grima

Stochastic averaging allows for the reduction of the dimension and complexity of stochastic dynamical systems with multiple time scales, replacing fast variables with statistically equivalent stochastic processes in order to analyze…

Probability · Mathematics 2015-02-25 William F. Thompson , Rachel A. Kuske , Adam H. Monahan

Excitatory and inhibitory nonlinear noisy leaky integrate and fire models are often used to describe neural networks. Recently, new mathematical results have provided a better understanding of them. It has been proved that a fully…

Analysis of PDEs · Mathematics 2016-09-07 María J. Cáceres , Ricarda Schneider

A binding neuron (BN) whith delayed feedback is considered. The neuron is fed externally with a Poisson stream of intensity $\lambda$. The neuron's output spikes are fed into its input with time delay $\Delta$. The resulting output stream…

Neurons and Cognition · Quantitative Biology 2014-12-09 Alexander Vidybida

Many phenomena in nature are described by excitable systems driven by colored noise. The temporal correlations in the fluctuations hinder an analytical treatment. We here present a general method of reduction to a white-noise system,…

Statistical Mechanics · Physics 2015-11-25 Jannis Schuecker , Markus Diesmann , Moritz Helias
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