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Identifying drug-target interactions is essential for developing effective therapeutics. Binding affinity quantifies these interactions, and traditional approaches rely on computationally intensive 3D structural data. In contrast, language…

Quantitative Methods · Quantitative Biology 2024-11-08 Radheesh Sharma Meda , Amir Barati Farimani

Manually labelling large collections of text data is a time-consuming, expensive, and laborious task, but one that is necessary to support machine learning based on text datasets. Active learning has been shown to be an effective way to…

Computation and Language · Computer Science 2019-10-11 Jinghui Lu , Maeve Henchion , Brian Mac Namee

Embodied manipulation is a fundamental ability in the realm of embodied artificial intelligence. Although current embodied manipulation models show certain generalizations in specific settings, they struggle in new environments and tasks…

In biobjective mixed integer linear programs (BOMILPs), two linear objectives are minimized over a polyhedron while restricting some of the variables to be integer. Since many of the techniques for finding or approximating the Pareto set of…

Data Structures and Algorithms · Computer Science 2018-09-17 Nathan Adelgren , Pietro Belotti , Akshay Gupte

Vision-language models (VLMs) unify computer vision and natural language processing in a single architecture capable of interpreting and describing images. Most state-of-the-art systems rely on two computationally intensive components:…

Computer Vision and Pattern Recognition · Computer Science 2025-06-25 Andrew Kiruluta , Priscilla Burity

In David Schmidt's PhD work he explored the use of denotational semantics as a programming language. It was part of an effort to not only treat formal semantics as specifications but also as interpreters and input to compiler generators.…

Programming Languages · Computer Science 2013-09-23 Mads Rosendahl

The Invertible Bloom Lookup Table (IBLT) is a probabilistic data structure for set representation, with applications in network and traffic monitoring. It is known for its ability to list its elements, an operation that succeeds with high…

Information Theory · Computer Science 2023-05-11 Daniella Bar-Lev , Avi Mizrahi , Tuvi Etzion , Ori Rottenstreich , Eitan Yaakobi

We propose abstract compilation for precise static type analysis of object-oriented languages based on coinductive logic programming. Source code is translated to a logic program, then type-checking and inference problems amount to queries…

Programming Languages · Computer Science 2017-09-15 Luca Franceschini , Davide Ancona , Ekaterina Komendantskaya

Empowered by transformer-based models, visual tracking has advanced significantly. However, the slow speed of current trackers limits their applicability on devices with constrained computational resources. To address this challenge, we…

Computer Vision and Pattern Recognition · Computer Science 2024-07-02 Xiangyang Yang , Dan Zeng , Xucheng Wang , You Wu , Hengzhou Ye , Qijun Zhao , Shuiwang Li

Approximations during program analysis are a necessary evil, as they ensure essential properties, such as soundness and termination of the analysis, but they also imply not always producing useful results. Automatic techniques have been…

Programming Languages · Computer Science 2018-12-18 Isabel Garcia-Contreras , Jose F. Morales , Manuel V. Hermenegildo

Source code processing heavily relies on the methods widely used in natural language processing (NLP), but involves specifics that need to be taken into account to achieve higher quality. An example of this specificity is that the semantics…

Software Engineering · Computer Science 2021-04-28 Nadezhda Chirkova

The binding problem in human cognition, concerning how the brain represents and connects objects within a fixed network of neural connections, remains a subject of intense debate. Most machine learning efforts addressing this issue in an…

Machine Learning · Computer Science 2023-10-18 Sindy Löwe , Phillip Lippe , Francesco Locatello , Max Welling

Do we still need to represent objects explicitly in multimodal large language models (MLLMs)? To one extreme, pre-trained encoders convert images into visual tokens, with which objects and spatiotemporal relationships may be implicitly…

Computer Vision and Pattern Recognition · Computer Science 2025-08-06 Zitian Tang , Shijie Wang , Junho Cho , Jaewook Yoo , Chen Sun

In this paper, we show a new approach to transformations of an imperative program with function calls and global variables into a logically constrained term rewriting system. The resulting system represents transitions of the whole…

Logic in Computer Science · Computer Science 2019-02-25 Yoshiaki Kanazawa , Naoki Nishida

Many vision-language models (VLMs) that prove very effective at a range of multimodal task, build on CLIP-based vision encoders, which are known to have various limitations. We investigate the hypothesis that the strong language backbone in…

Computer Vision and Pattern Recognition · Computer Science 2025-09-22 Sho Takishita , Jay Gala , Abdelrahman Mohamed , Kentaro Inui , Yova Kementchedjhieva

Comprehensive literature review requires synthesizing vast amounts of research -- a labor intensive and cognitively demanding process. Most prior work focuses either on helping researchers deeply understand a few papers (e.g., for triaging…

Human-Computer Interaction · Computer Science 2025-04-28 Raymond Fok , Joseph Chee Chang , Marissa Radensky , Pao Siangliulue , Jonathan Bragg , Amy X. Zhang , Daniel S. Weld

High-quality visualizations are an essential part of robotics research, enabling clear communication of results through figures, animations, and demonstration videos. While Blender is a powerful and freely available 3D graphics platform,…

Robotics · Computer Science 2026-01-01 Peter Messina , Daniel Rakita

Data trees serve as an abstraction of structured data, such as XML documents. A number of specification formalisms for languages of data trees have been developed, many of them adhering to the paradigm of register automata, which is based…

Formal Languages and Automata Theory · Computer Science 2024-07-12 Simon Prucker , Lutz Schröder

In this technical report, a new formulation for embedding a neural network into an optimization model is described. This formulation does not require binary variables to properly compute the output of the neural network for specific types…

Optimization and Control · Mathematics 2024-02-06 Héctor G. -de-Alba , Andres Tellez , Cipriano Santos , Emmanuel Gómez

Python bindings are a critical bridge between high-performance C++ libraries and the flexibility of Python, enabling rapid prototyping, reproducible experiments, and integration with simulation and learning frameworks in robotics research.…

Robotics · Computer Science 2026-03-06 Weihang Guo , Theodoros Tyrovouzis , Lydia E. Kavraki