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Knowledge about software used in scientific investigations is important for several reasons, for instance, to enable an understanding of provenance and methods involved in data handling. However, software is usually not formally cited, but…

Information Retrieval · Computer Science 2021-08-23 David Schindler , Felix Bensmann , Stefan Dietze , Frank Krüger

Background: Data mining and analyzing of public Git software repositories is a growing research field. The tools used for studies that investigate a single project or a group of projects have been refined, but it is not clear whether the…

Software Engineering · Computer Science 2020-08-18 Adam Tutko , Austin Henley , Audris Mockus

Software artifacts are ubiquitous in our lives being an essential part of home appliances, cars, cel phones, and even in more critical activities like aeronautics and health sciences. In this context software failures may produce enormous…

Software Engineering · Computer Science 2022-06-16 Carlos Gustavo Lopez Pombo , Agustín Eloy Martinez Suñé

Current research in clone detection suffers from poor ecosystems for evaluating precision of clone detection tools. Corpora of labeled clones are scarce and incomplete, making evaluation labor intensive and idiosyncratic, and limiting inter…

Software Engineering · Computer Science 2019-05-30 Vaibhav Saini , Farima Farmahinifarahani , Yadong Lu , Di Yang , Pedro Martins , Hitesh Sajnani , Pierre Baldi , Cristina Lopes

Context: To reduce manual effort of extracting test cases from natural-language requirements, many approaches based on Natural Language Processing (NLP) have been proposed in the literature. Given the large amount of approaches in this…

Software Engineering · Computer Science 2020-03-25 Vahid Garousi , Sara Bauer , Michael Felderer

Just like other software, spreadsheets can contain significant faults. Static analysis is an accepted and well-established technique in software engineering known for its capability to discover faults. In recent years, a growing number of…

Software Engineering · Computer Science 2014-01-30 Daniel Kulesz , Jan-Peter Ostberg

Scientific writing involves retrieving, summarizing, and citing relevant papers, which can be time-consuming processes in large and rapidly evolving fields. By making these processes inter-operable, natural language processing (NLP)…

Computation and Language · Computer Science 2023-11-07 Nianlong Gu , Richard H. R. Hahnloser

The reuse of research software is central to research efficiency and academic exchange. The application of software enables researchers with varied backgrounds to reproduce, validate, and expand upon study findings. Furthermore, the…

We present a novel system providing summaries for Computer Science publications. Through a qualitative user study, we identified the most valuable scenarios for discovery, exploration and understanding of scientific documents. Based on…

The high incidence of irreproducible research has led to urgent appeals for transparency and equitable practices in open science. For the scientific disciplines that rely on computationally intensive analyses of large data sets, a granular…

Improved software discovery is a prerequisite for greater software reuse: after all, if someone cannot find software for a particular task, they cannot reuse it. Understanding people's approaches and preferences when they look for software…

Computers and Society · Computer Science 2018-05-30 Michael Hucka , Matthew J. Graham

Code search is an important and frequent activity for developers using computational notebooks (e.g., Jupyter). The flexibility of notebooks brings challenges for effective code search, where classic search interfaces for traditional…

Human-Computer Interaction · Computer Science 2021-02-03 Xingjun Li , Yuanxin Wang , Hong Wang , Yang Wang , Jian Zhao

The causes of the reproducibility crisis include lack of standardization and transparency in scientific reporting. Checklists such as ARRIVE and CONSORT seek to improve transparency, but they are not always followed by authors and peer…

Open-sourcing research publications is a key enabler for the reproducibility of studies and the collective scientific progress of a research community. As all fields of science develop more advanced algorithms, we become more dependent on…

Systems and Control · Electrical Eng. & Systems 2023-08-22 Siqi Zhou , Lukas Brunke , Allen Tao , Adam W. Hall , Federico Pizarro Bejarano , Jacopo Panerati , Angela P. Schoellig

Automatically extracting key information from scientific documents has the potential to help scientists work more efficiently and accelerate the pace of scientific progress. Prior work has considered extracting document-level entity…

Digital Libraries · Computer Science 2021-06-04 Vijay Viswanathan , Graham Neubig , Pengfei Liu

Scientific abstracts are often used as proxies for the content and thematic focus of research publications. However, a significant share of published abstracts contains extraneous information-such as publisher copyright statements, section…

Computation and Language · Computer Science 2026-01-01 Michael E. Rose , Nils A. Herrmann , Sebastian Erhardt

In the social sciences, researchers search for information on the Web, but this is most often distributed on different websites, search portals, digital libraries, data archives, and databases. In this work, we present an integrated search…

Digital Libraries · Computer Science 2019-09-25 Daniel Hienert , Dagmar Kern , Katarina Boland , Benjamin Zapilko , Peter Mutschke

Conducting literature reviews for scientific papers is essential for understanding research, its limitations, and building on existing work. It is a tedious task which makes an automatic literature review generator appealing. Unfortunately,…

To satisfy the principles of FAIR software, software sustainability and software citation, research software must be formally published. Publication repositories make this possible and provide published software versions with unique and…

Software Engineering · Computer Science 2022-01-25 Stephan Druskat , Oliver Bertuch , Guido Juckeland , Oliver Knodel , Tobias Schlauch

The ubiquity of computation in modern scientific research inflicts new challenges for reproducibility. While most journals now require code and data be made available, the standards for organization, annotation, and validation remain lax,…

Other Quantitative Biology · Quantitative Biology 2022-10-07 Griffin Chure