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Any cutting-edge scientific research project requires a myriad of computational tools for data generation, management, analysis and visualization. Python is a flexible and extensible scientific programming platform that offered the perfect…

Quantitative Methods · Quantitative Biology 2008-03-14 Julius B. Lucks

The process of conducting literature reviews is often time-consuming and labor-intensive. To streamline this process, I present an AI Literature Review Suite that integrates several functionalities to provide a comprehensive literature…

Digital Libraries · Computer Science 2023-08-07 David A. Tovar

This document explores the advantages of integrating open source software and practices in managing a scientific lab, emphasizing reproducibility and the avoidance of pitfalls. It details practical applications from website management using…

Computers and Society · Computer Science 2024-05-14 Julien Cohen-Adad

Software is now a vital scientific instrument, providing the tools for data collection and analysis across disciplines from bioinformatics and computational physics, to the humanities. The software used in research is often home-grown and…

Software Engineering · Computer Science 2019-03-15 Mario Rosado de Souza , Robert Haines , Markel Vigo , Caroline Jay

Ensuring the reproducibility of scientific work is crucial as it allows the consistent verification of scientific claims and facilitates the advancement of knowledge by providing a reliable foundation for future research. However,…

Software Engineering · Computer Science 2025-04-14 Lázaro Costa , Susana Barbosa , Jácome Cunha

Context:Software Development Analytics is a research area concerned with providing insights to improve product deliveries and processes. Many types of studies, data sources and mining methods have been used for that purpose. Objective:This…

Software Engineering · Computer Science 2025-11-06 Joao Caldeira , Fernando Brito e Abreu , Jorge Cardoso , Rachel Simões , Toacy Oliveira , José Reis

Open-source scientific software is a major driver of scientific progress, yet its development and reuse remain difficult in collaborative settings. Researchers repeatedly face four recurring challenges: discovering and reproducing existing…

Digital Libraries · Computer Science 2026-04-22 Jan Philipp Albrecht , Deborah Schmidt , Lucas Rieckert , Maximilian Otto , Kyle Harrington

Systematic Literature Reviews aim at investigating current approaches to conclude a research gap or determine a futuristic approach. They represent a significant part of a research activity, from which new concepts stem. However, with the…

Digital Libraries · Computer Science 2022-08-05 Nada Sahlab , Hesham Kahoul , Nasser Jazdi , Michael Weyrich

The accelerating pace of research on autoregressive generative models has produced thousands of papers, making manual literature surveys and reproduction studies increasingly impractical. We present a fully open-source, reproducible…

Information Retrieval · Computer Science 2025-08-07 Faruk Alpay , Bugra Kilictas , Hamdi Alakkad

Research is an incremental, iterative process, with new results relying and building upon previous ones. Scientists need to find, retrieve, understand, and verify results in order to confidently extend them, even when the results are their…

Computation · Statistics 2023-06-30 Gabriel Becker , Sara E. Moore , Michael Lawrence

Analogies have been central to creative problem-solving throughout the history of science and technology. As the number of scientific papers continues to increase exponentially, there is a growing opportunity for finding diverse solutions…

Human-Computer Interaction · Computer Science 2022-06-01 Hyeonsu B. Kang , Xin Qian , Tom Hope , Dafna Shahaf , Joel Chan , Aniket Kittur

Many research groups aspire to make data and code FAIR and reproducible, yet struggle because the data and code life cycles are disconnected, executable environments are often missing from published work, and technical skill requirements…

Context: Research software is essential for developing advanced tools and models to solve complex research problems and drive innovation across domains. Therefore, it is essential to ensure its correctness. Software testing plays a vital…

Software Engineering · Computer Science 2025-01-30 Nasir U. Eisty , Upulee Kanewala , Jeffrey C. Carver

Most of the data produced in software projects is of textual nature: source code, specifications, or documentations. The advances in quantitative analysis methods drove a lot of data analytics in software engineering. This has overshadowed…

Software Engineering · Computer Science 2016-12-02 S. Wagner , D. Méndez Fernández

CONTEXT: There has been a rapid growth in the use of data analytics to underpin evidence-based software engineering. However the combination of complex techniques, diverse reporting standards and poorly understood underlying phenomena are…

Software Engineering · Computer Science 2019-04-16 Tim Menzies , Martin Shepperd

Public Good Software's products match journalistic articles and other narrative content to relevant charitable causes and nonprofit organizations so that readers can take action on the issues raised by the articles' publishers. Previously…

Computers and Society · Computer Science 2017-10-25 Eric Kingery , Michael S. Manley , Daniel Ratner

We present an expository overview of technical and cultural challenges to the development and adoption of automation at various stages in the data science prediction lifecycle, restricting focus to supervised learning with structured…

Machine Learning · Computer Science 2022-08-26 Nicholas Hoell

In recent years there has been widespread concern in the scientific community over a reproducibility crisis. Among the major causes that have been identified is statistical: In many scientific research the statistical analysis (including…

Applications · Statistics 2017-08-17 Norman Matloff , Reed Davis , Laurel Beckett , Paul Thompson

A huge number of academic papers are coming out from a lot of conferences and journals these days. In these circumstances, most researchers rely on key-based search or browsing through proceedings of top conferences and journals to find…

Information Retrieval · Computer Science 2013-04-22 Joonseok Lee , Kisung Lee , Jennifer G. Kim

Academic research is an exploration activity to solve problems that have never been resolved before. By this nature, each academic research work is required to perform a literature review to distinguish its novelties that have not been…

Computation and Language · Computer Science 2022-01-07 Xiangci Li , Jessica Ouyang