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Optimization methodologies for training large-scale neural architectures often rely on uniform gradient propagation mechanisms that fail to align with hierarchical linguistic structures, limiting their capacity to generalize across diverse…

Computation and Language · Computer Science 2025-03-26 Daphne Quillington , Kingsley Fairbrother , Xavier Tattershall , Irin Kabakum

In the light of recent experimental findings that gap junctions are essential for low level intensity detection in the sensory periphery, the Greenberg-Hastings cellular automaton is employed to model the response of a two-dimensional…

Neurons and Cognition · Quantitative Biology 2016-09-08 Mauro Copelli , Osame Kinouchi

Phase separation, crucial for spatially segregating biomolecules in cells, is well-understood in the simple case of a few components with pairwise interactions. Yet, biological cells challenge the simple picture in at least two ways: First,…

Soft Condensed Matter · Physics 2024-03-12 Chengjie Luo , Yicheng Qiang , David Zwicker

Training agents to communicate with one another given task-based supervision only has attracted considerable attention recently, due to the growing interest in developing models for human-agent interaction. Prior work on the topic focused…

Computation and Language · Computer Science 2019-03-26 Ben Bogin , Mor Geva , Jonathan Berant

A state-dependent discrete memoryless multiple access channel is considered to model an integrated sensing and communication system, where two transmitters wish to convey messages to a receiver while simultaneously estimating the state…

Information Theory · Computer Science 2025-06-19 Yao Liu , Min Li , An Liu , Lawrence Ong , Aylin Yener

The fast motion of Low Earth Orbit (LEO) satellites causes the propagation channel to vary rapidly, and its behavior is strongly shaped by the surrounding environment, especially at low elevation angles where signals are highly susceptible…

Networking and Internet Architecture · Computer Science 2026-03-27 Jingyi Tian , Lin Cai

Controlling matter at the level of electrons using ultrafast laser sources represents an important challenge for science and technology. Recently we introduced a general laser control scheme (the Stark Control of Electrons at Interfaces or…

Chemical Physics · Physics 2023-07-31 Antonio J. Garzón-Ramírez , Ignacio Franco

Reinforcement learning agents often exhibit unintended goal-directed behaviour outside their training distribution, but we currently lack a principled understanding of how such agents will generalise to novel environments based on their…

Machine Learning · Computer Science 2026-05-25 Jason Ross Brown , Edward James Young

Gravitational wave detectors from the advanced generation onwards are expected to be limited in sensitivity by thermal noise of the optics, making the reduction of this noise a key factor in the success of such detectors. A proposed method…

Instrumentation and Methods for Astrophysics · Physics 2015-06-03 Paul Fulda , Charlotte Bond , Daniel Brown , Frank Brückner , Ludovico Carbone , Simon Chelkowski , Stefan Hild , Keiko Kokeyama , Mengyao Wang , Andreas Freise

Optimization-based models have been used to predict cellular behavior for over 25 years. The constraints in these models are derived from genome annotations, measured macro-molecular composition of cells, and by measuring the cell's growth…

Quantitative Methods · Quantitative Biology 2019-05-21 Laurence Yang , Michael A. Saunders , Jean-Christophe Lachance , Bernhard O. Palsson , José Bento

Biological oscillations are periodic changes in various signaling processes crucial for the proper functioning of living organisms. These oscillations are modeled by ordinary differential equations, with coefficient variations leading to…

Machine Learning · Computer Science 2024-12-04 Heng Rao , Yu Gu , Jason Zipeng Zhang , Ge Yu , Yang Cao , Minghan Chen

To adapt their behaviour in changing environments, cells sense concentrations by binding external ligands to their receptors. However, incorrect ligands may bind nonspecifically to receptors, and when their concentration is large, this…

Molecular Networks · Quantitative Biology 2015-07-23 Thierry Mora

Many eukaryotic cells chemotax, sensing and following chemical gradients. However, experiments have shown that even under conditions when single cells cannot chemotax, small clusters may still follow a gradient. This behavior has been…

Biological Physics · Physics 2023-07-19 Brian A. Camley , Juliane Zimmermann , Herbert Levine , Wouter-Jan Rappel

Living cells often need to measure chemical concentrations that vary in time. To this end, they deploy many resources, e.g. receptors, downstream signaling molecules, time and energy. Here, we present a theory for the optimal design of a…

Molecular Networks · Quantitative Biology 2019-02-26 G. Malaguti , P. R. ten Wolde

Cellular systems are becoming more heterogeneous with the introduction of low power nodes including femtocells, relays, and distributed antennas. Unfortunately, the resulting interference environment is also becoming more complicated,…

Information Theory · Computer Science 2013-04-29 Robert W. Heath , Marios Kountouris , Tianyang Bai

The Hall resistance obtained in liquid gated Hall effect measurement of graphene demonstrates a higher sensitivity than the sheet resistance and the gate-source current for L-histidine of different concentrations in the pM range. This…

Mesoscale and Nanoscale Physics · Physics 2017-12-06 Hualin Zhan , Jiri Cervenka , Steven Prawer , David J. Garrett

Chemical reactions are a prominent feature of molecular communication (MC) systems, with no direct parallels in wireless communications. While chemical reactions may be used inside the transmitter nodes, receiver nodes or the communication…

Information Theory · Computer Science 2018-04-25 Maryam Farahnak-Ghazani , Gholamali Aminian , Mahtab Mirmohseni , Amin Gohari , Masoumeh Nasiri-Kenari

We describe the electronic conductivity, as a function of the Fermi energy, in the Bernal bilayer graphene (BLG) in presence of a random distribution of vacancies that simulate resonant adsorbates. We compare it to monolayer (MLG) with the…

Mesoscale and Nanoscale Physics · Physics 2017-04-26 Ahmed Missaoui , Jouda Jemaa Khabthani , Nejm-Eddine Jaidane , Didier Mayou , Guy Trambly de Laissardière

Microbiome data require statistical models that can simultaneously decode microbes' reaction to the environment and interactions among microbes. While a multiresponse linear regression model seems like a straight-forward solution, we argue…

Applications · Statistics 2022-07-26 Yunyi Shen , Claudia Solis-Lemus

Graph neural network have achieved impressive results in predicting molecular properties, but they do not directly account for local and hidden structures in the graph such as functional groups and molecular geometry. At each propagation…

Machine Learning · Computer Science 2020-02-25 Daniel Flam-Shepherd , Tony Wu , Pascal Friederich , Alan Aspuru-Guzik
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