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We introduce FLOWR, a novel structure-based framework for the generation and optimization of three-dimensional ligands. FLOWR integrates continuous and categorical flow matching with equivariant optimal transport, enhanced by an efficient…

Quantitative Methods · Quantitative Biology 2025-05-14 Julian Cremer , Ross Irwin , Alessandro Tibo , Jon Paul Janet , Simon Olsson , Djork-Arné Clevert

In CALPHAD-type thermodynamic databases, nonstoichiometric compounds are typically described by sublattice models where the sublattice site fractions represent the occupation probability of different atomic, ionic or defect species on…

Materials Science · Physics 2025-03-04 Yanzhou Ji , Yueze Tan , Long-Qing Chen

Crystal structure prediction is a long-standing challenge in materials science, with most data-driven methods developed for inorganic systems. This leaves an important gap for organic crystals, which are central to pharmaceuticals,…

Materials Science · Physics 2026-02-25 Mohammadmahdi Vahediahmar , Matthew A. McDonald , Feng Liu

Recognition of the role of extended defects on local phase transitions has led to the conceptualization of the defect phase, localized thermodynamically stable interfacial states that have since been applied in a myriad of material systems…

Materials Science · Physics 2025-06-17 W. Streit Cunningham , Tianjiao Lei , Hannah C. Howard , Timothy J Rupert , Daniel S. Gianola

To facilitate rational molecular and materials design, this research proposes an integrated computational framework that combines stochastic simulation, ab initio quantum chemistry, and molecular docking. The suggested workflow allows…

Materials Science · Physics 2026-01-08 Md Rakibul Karim Akanda , Michael P. Richard

We have developed a software package CALYPSO (Crystal structure AnaLYsis by Particle Swarm Optimization) to predict the energetically stable/metastable crystal structures of materials at given chemical compositions and external conditions…

Materials Science · Physics 2015-06-05 Yanchao Wang , Jian Lv , Li Zhu , Yanming Ma

A computational fluid dynamics (CFD) simulation framework for fluid-flow prediction is developed on the Tensor Processing Unit (TPU) platform. The TPU architecture is featured with accelerated dense matrix multiplication, large high…

Computational Physics · Physics 2022-03-02 Qing Wang , Matthias Ihme , Yi-Fan Chen , John Anderson

Autonomous experimentation systems have been used to greatly advance the integrated computational materials engineering (ICME) paradigm. This paper outlines a framework that enables the design and selection of data collection workflows for…

Materials Science · Physics 2022-06-20 Rohan Casukhela , Sriram Vijayan , Joerg R. Jinschek , Stephen R. Niezgoda

Modern enterprise AI applications increasingly rely on compound AI systems - architectures that compose multiple models, retrievers, and tools to accomplish complex tasks. Deploying such systems in production demands inference…

Artificial Intelligence · Computer Science 2026-04-29 Srikanta Prasad S , Utkarsh Arora

The prediction of aircraft aerodynamic quantities of interest remains among the most pressing challenges for computational fluid dynamics. The aircraft aerodynamics are inherently turbulent with mean-flow three-dimensionality, often…

Fluid Dynamics · Physics 2021-05-25 Adrián Lozano-Durán , Hyunji Jane Bae

Microfluidic cooling has been recognized as one of the most promising solutions to achieve efficient thermal management for three-dimensional integrated circuits (3DICs). It enables more opportunities to architect 3DICs with different die…

Hardware Architecture · Computer Science 2024-04-01 Runxi Wang , Jun-Han Han , Mircea Stan , Xinfei Guo

Scanning transmission electron microscopy (STEM) has become a cornerstone instrument for semiconductor materials metrology, enabling nanoscale analysis of complex multilayer structures that define device performance. Developing effective…

As large language models (LLMs) are increasingly deployed in high-stakes and operational settings, evaluation strategies based solely on aggregate accuracy are often insucient to characterize system reliability. This study proposes a…

Artificial Intelligence · Computer Science 2026-05-06 Hikmat Karimov , Rahid Zahid Alekberli

Phylogenetic analysis, which allow to understand the evolution of bacterial and viral epidemics, requires large quantities of data to be analysed and processed for knowledge extraction. One of the major challenges consists on the…

Populations and Evolution · Quantitative Biology 2024-05-28 Nyckollas Brandão , André Jesus , André Páscoa , Alexandre P. Francisco , Mário Ramirez , Cátia Vaz

The freud Python package is a powerful library for analyzing simulation data. Written with modern simulation and data analysis workflows in mind, freud provides a Python interface to fast, parallelized C++ routines that run efficiently on…

Recent research in materials science opens exciting perspectives to design novel quantum materials and devices, but it calls for quantitative predictions of properties which are not accessible in standard first principles packages. PAOFLOW…

Personalized Federated Learning (PFL) enables collaboratively model training on decentralized, heterogeneous data while tailoring them to each client's unique distribution. However, existing PFL methods produce static models with a fixed…

Machine Learning · Computer Science 2026-01-16 Boyi Liu , Zimu Zhou , Yongxin Tong

Flow-matching models have enabled high-quality text-to-speech synthesis, but their iterative sampling process during inference incurs substantial computational cost. Although distillation is widely used to reduce the number of inference…

Sound · Computer Science 2026-02-11 Bin Lin , Peng Yang , Chao Yan , Xiaochen Liu , Wei Wang , Boyong Wu , Pengfei Tan , Xuerui Yang

Diffusion models have revolutionized generative tasks through high-fidelity outputs, yet flow matching (FM) offers faster inference and empirical performance gains. However, current foundation FM models are computationally prohibitive for…

Computer Vision and Pattern Recognition · Computer Science 2025-06-04 Johannes Schusterbauer , Ming Gui , Frank Fundel , Björn Ommer

Obstacle detection is crucial to the operation of autonomous driving systems, which rely on multiple sensors, such as cameras and LiDARs, combined with code logic and deep learning models to detect obstacles for time-sensitive decisions.…

Software Engineering · Computer Science 2025-10-16 Tri Minh-Triet Pham , Diego Elias Costa , Weiyi Shang , Jinqiu Yang