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Real-world data often comes in compressed form. Analyzing compressed data directly (without decompressing it) can save space and time by orders of magnitude. In this work, we focus on fundamental sequence comparison problems and try to…

Data Structures and Algorithms · Computer Science 2021-12-14 Arun Ganesh , Tomasz Kociumaka , Andrea Lincoln , Barna Saha

Compressed indexing enables powerful queries over massive and repetitive textual datasets using space proportional to the compressed input. While theoretical advances have led to highly efficient index structures, their practical…

Data Structures and Algorithms · Computer Science 2025-10-24 Ankith Reddy Adudodla , Dominik Kempa

In this paper, a fully compressed pattern matching problem is studied. The compression is represented by straight-line programs (SLPs), i.e. a context-free grammars generating exactly one string; the term fully means that both the pattern…

Data Structures and Algorithms · Computer Science 2013-06-26 Artur Jeż

The complexity of computing the Lempel-Ziv factorization and the set of all runs (= maximal repetitions) is studied in the decision tree model of computation over ordered alphabet. It is known that both these problems can be solved by RAM…

Data Structures and Algorithms · Computer Science 2014-09-22 Dmitry Kosolobov

We introduce the first self-index based on the Lempel-Ziv 1977 compression format (LZ77). It is particularly competitive for highly repetitive text collections such as sequence databases of genomes of related species, software repositories,…

Data Structures and Algorithms · Computer Science 2011-01-24 Sebastian Kreft , Gonzalo Navarro

We propose algorithms that, given the input string of length $n$ over integer alphabet of size $\sigma$, construct the Burrows-Wheeler transform (BWT), the permuted longest-common-prefix (PLCP) array, and the LZ77 parsing in…

Data Structures and Algorithms · Computer Science 2020-12-09 Dominik Kempa

Existing work on prompt compression for Large Language Models (LLM) focuses on lossy methods that try to maximize the retention of semantic information that is relevant to downstream tasks while significantly reducing the sequence length.…

Computation and Language · Computer Science 2025-08-22 John Harvill , Ziwei Fan , Hao Wang , Luke Huan , Anoop Deoras , Yizhou Sun , Hao Ding

Simple and fast decoding is one of the main advantages of LZ77-type text encoding used in many popular file compressors such as gzip and 7zip. With the recent introduction of external memory algorithms for Lempel-Ziv factorization there is…

Data Structures and Algorithms · Computer Science 2020-12-11 Djamal Belazzougui , Juha Kärkkäinen , Dominik Kempa , Simon J. Puglisi

This paper investigates the size in bits of the LZ77 encoding, which is the most popular and efficient variant of the Lempel-Ziv encodings used in data compression. We prove that, for a wide natural class of variable-length encoders for…

Discrete Mathematics · Computer Science 2018-01-10 Dmitry Kosolobov

This paper presents conditional versions of Lempel-Ziv (LZ) algorithm for settings where compressor and decompressor have access to the same side information. We propose a fixed-length-parsing LZ algorithm with side information, motivated…

Information Theory · Computer Science 2017-07-19 Yeohee Im , Sergio Verdú

We present a framework facilitating the implementation and comparison of text compression algorithms. We evaluate its features by a case study on two novel compression algorithms based on the Lempel-Ziv compression schemes that perform well…

Data Structures and Algorithms · Computer Science 2021-04-23 Patrick Dinklage , Johannes Fischer , Dominik Köppl , Marvin Löbel , Kunihiko Sadakane

Converting a compressed format of a string into another compressed format without an explicit decompression is one of the central research topics in string processing. We discuss the problem of converting the run-length Burrows-Wheeler…

Data Structures and Algorithms · Computer Science 2019-02-15 Takaaki Nishimoto , Yasuo Tabei

While the language modeling objective has been shown to be deeply connected with compression, it is surprising that modern LLMs are not employed in practical text compression systems. In this paper, we provide an in-depth analysis of neural…

Computation and Language · Computer Science 2024-09-26 Fazal Mittu , Yihuan Bu , Akshat Gupta , Ashok Devireddy , Alp Eren Ozdarendeli , Anant Singh , Gopala Anumanchipalli

At the present scenario of the internet, there exist many optimization techniques to improve the Web speed but almost expensive in terms of bandwidth. So after a long investigation on different techniques to compress the data without any…

Information Theory · Computer Science 2014-05-20 Hemant Kumar Saini , Satpal Singh Kushwaha , C. Rama Krishna

We present an algorithm that constructs the LZ-End parsing (a variation of LZ77) of a given string of length $n$ in $O(n\log\ell)$ expected time and $O(z + \ell)$ space, where $z$ is the number of phrases in the parsing and $\ell$ is the…

Data Structures and Algorithms · Computer Science 2020-12-15 Dominik Kempa , Dmitry Kosolobov

We introduce height-bounded LZ encodings (LZHB), a new family of compressed representations that are variants of Lempel-Ziv parsings with a focus on bounding the worst-case access time to arbitrary positions in the text directly via the…

Data Structures and Algorithms · Computer Science 2024-04-26 Hideo Bannai , Mitsuru Funakoshi , Diptarama Hendrian , Myuji Matsuda , Simon J. Puglisi

We generalize Karp-Rabin string matching to handle multiple patterns in $\mathcal{O}(n \log n + m)$ time and $\mathcal{O}(s)$ space, where $n$ is the length of the text and $m$ is the total length of the $s$ patterns, returning correct…

Data Structures and Algorithms · Computer Science 2015-09-11 Johannes Fischer , Travis Gagie , Paweł Gawrychowski , Tomasz Kociumaka

The compression-complexity trade-off of lossy compression algorithms that are based on a random codebook or a random database is examined. Motivated, in part, by recent results of Gupta-Verd\'{u}-Weissman (GVW) and their underlying…

Information Theory · Computer Science 2009-04-23 Chris Gioran , Ioannis Kontoyiannis

Data compression continues to evolve, with traditional information theory methods being widely used for compressing text, images, and videos. Recently, there has been growing interest in leveraging Generative AI for predictive compression…

Information Theory · Computer Science 2024-09-24 Swathi Shree Narashiman , Nitin Chandrachoodan

Given two positions $i$ and $j$ in a string $T$ of length $N$, a longest common extension (LCE) query asks for the length of the longest common prefix between suffixes beginning at $i$ and $j$. A compressed LCE data structure is a data…

Data Structures and Algorithms · Computer Science 2016-11-22 Tomohiro I