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The yaglm package aims to make the broader ecosystem of modern generalized linear models accessible to data analysts and researchers. This ecosystem encompasses a range of loss functions (e.g. linear, logistic, quantile regression),…

Computation · Statistics 2021-10-13 Iain Carmichael , Thomas Keefe , Naomi Giertych , Jonathan P Williams

Small and wide angle x-ray scattering tensor tomography are powerful methods for studying anisotropic nanostructures in a volume-resolved manner, and are becoming increasingly available to users of synchrotron facilities. The analysis of…

Materials Science · Physics 2025-04-24 Leonard C. Nielsen , Mads Carlsen , Sici Wang , Arthur Baroni , Torne Tänzer , Marianne Liebi , Paul Erhart

Deconvolution is a statistical inverse problem to estimate the distribution of a random variable based on its noisy observations. Despite the extensive studies on the topic, deconvolution with unknown noise distribution remains as a…

Statistics Theory · Mathematics 2020-04-06 Devavrat Shah , Dogyoon Song

Data unfolding -- the removal of noise or artifacts from measurements -- is a fundamental task across the experimental sciences. Of particular interest are applications in physics, where the dominant approach is Richardson-Lucy (RL)…

Optimization and Control · Mathematics 2026-04-24 Katy Craig , Benjamin Faktor , Benjamin Nachman

Presentation of folded documents is not an uncommon case in modern society. Digitizing such documents by capturing them with a smartphone camera can be tricky since a crease can divide the document contents into separate planes. To unfold…

Computer Vision and Pattern Recognition · Computer Science 2024-08-13 A. M. Ershov , D. V. Tropin , E. E. Limonova , D. P. Nikolaev , V. V. Arlazarov

DADApy is a python software package for analysing and characterising high-dimensional data manifolds. It provides methods for estimating the intrinsic dimension and the probability density, for performing density-based clustering and for…

Convolution and cross-correlation are the basis of filtering and pattern or template matching in multimedia signal processing. We propose two throughput scaling options for any one-dimensional convolution kernel in programmable processors…

Multimedia · Computer Science 2012-01-17 Mohammad Ashraful Anam , Yiannis Andreopoulos

SHallow REcurrent Decoders (SHRED) provide a deep learning strategy for modeling high-dimensional dynamical systems and/or spatiotemporal data from dynamical system snapshot observations. PySHRED is a Python package that implements SHRED…

Machine Learning · Computer Science 2025-07-29 David Ye , Jan Williams , Mars Gao , Stefano Riva , Matteo Tomasetto , David Zoro , J. Nathan Kutz

We present \code{phaser}, an open-source Python package that provides a unified interface to both conventional and gradient descent-based ptychographic algorithms. Features such as mixed-state probe, probe position correction, and…

Computational Physics · Physics 2025-07-21 Colin Gilgenbach , Menglin Zhu , James M. LeBeau

Movies of human induced pluripotent stem cell (hiPSC)-derived engineered cardiac tissue (microbundles) contain abundant information about structural and functional maturity. However, extracting these data in a reproducible and…

An open-source, Python-based Temporal Analysis of Products (TAP) reactor simulation and processing program is introduced. TAPsolver utilizes algorithmic differentiation for the calculation of highly accurate derivatives, which are used to…

Computational Engineering, Finance, and Science · Computer Science 2020-09-01 Adam Yonge , M. Ross Kunz , Rakesh Batchu , Zongtang Fang , Tobin Issac , Rebecca Fushimi , Andrew J. Medford

A procedure for unfolding the true distribution from experimental data is presented. Machine learning methods are applied for simultaneous identification of an apparatus function and solving of an inverse problem. A priori information about…

Data Analysis, Statistics and Probability · Physics 2011-05-26 Nikolai Gagunashvili

Optimization methods play a central role in signal processing, serving as the mathematical foundation for inference, estimation, and control. While classical iterative optimization algorithms provide interpretability and theoretical…

Machine Learning · Computer Science 2026-04-01 Nir Shlezinger , Santiago Segarra , Yi Zhang , Dvir Avrahami , Zohar Davidov , Tirza Routtenberg , Yonina C. Eldar

Multidimensional unfolding methods are widely used for visualizing item response data. Such methods project respondents and items simultaneously onto a low-dimensional Euclidian space, in which respondents and items are represented by ideal…

Methodology · Statistics 2020-09-04 Yunxiao Chen , Zhiliang Ying , Haoran Zhang

Aims. We present pyUPMASK, an unsupervised clustering method for stellar clusters that builds upon the original UPMASK package. Its general approach makes it plausible to be applied to analyses that deal with binary classes of any kind, as…

Astrophysics of Galaxies · Physics 2021-06-16 M. S. Pera , G. I. Perren , A. Moitinho , H. D. Navone , R. A. Vazquez

partycls is a Python framework for cluster analysis of systems of interacting particles. By grouping particles that share similar structural or dynamical properties, partycls enables rapid and unsupervised exploration of the system's…

Computational Physics · Physics 2021-11-22 Joris Paret , Daniele Coslovich

Be it for a malicious or legitimate purpose, packing, a transformation that consists in applying various operations like compression or encryption to a binary file, i.e. for making reverse engineering harder or obfuscating code, is widely…

Cryptography and Security · Computer Science 2023-02-21 Alexandre D'Hondt , Charles-Henry Bertrand Van Ouytsel , Axel Legay

Fully Bayesian Unfolding differs from other unfolding methods by providing the full posterior probability of unfolded spectra for each bin. We extended the method for the feature of regularization which could be helpful for unfolding…

Data Analysis, Statistics and Probability · Physics 2020-01-17 Petr Baron

In a large class of statistical inverse problems it is necessary to suppose that the transformation that is inverted is known. Although, in many applications, it is unrealistic to make this assumption, the problem is often insoluble without…

Statistics Theory · Mathematics 2008-12-18 Aurore Delaigle , Peter Hall , Alexander Meister

PyPOTS is an open-source Python library dedicated to data mining and analysis on multivariate partially-observed time series with missing values. Particularly, it provides easy access to diverse algorithms categorized into five tasks:…

Machine Learning · Computer Science 2025-07-10 Wenjie Du , Yiyuan Yang , Linglong Qian , Jun Wang , Qingsong Wen
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