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Clustering attempts to partition data instances into several distinctive groups, while the similarities among data belonging to the common partition can be principally reserved. Furthermore, incomplete data frequently occurs in many…

Machine Learning · Computer Science 2022-08-30 Miao Cheng , Xinge You

This paper presents an R package to handle and represent measurements with errors in a very simple way. We briefly introduce the main concepts of metrology and propagation of uncertainty, and discuss related R packages. Building upon this,…

Computation · Statistics 2019-08-02 Iñaki Ucar , Edzer Pebesma , Arturo Azcorra

Hyperuniformity is the study of stationary point processes with a sub-Poisson variance in a large window. In other words, counting the points of a hyperuniform point process that fall in a given large region yields a small-variance Monte…

Methodology · Statistics 2023-05-04 Diala Hawat , Guillaume Gautier , Rémi Bardenet , Raphaël Lachièze-Rey

The increasing availability of high-quality optical and near-infrared spectroscopic data, as well as advances in modelling techniques, have greatly expanded the scientific potential of spectroscopic studies. However, the software tools…

Instrumentation and Methods for Astrophysics · Physics 2025-12-23 Daniele Gasparri , Lorenzo Morelli , Umberto Battino , Jairo Méndez Abreu , Adriana de Lorenzo-Cáceres

PyLlama is a handy Python toolkit to compute the electromagnetic reflection and transmission properties of arbitrary multilayered linear media, including the case of anisotropy. Relying on a $4 \times 4$-matrix formalism, PyLlama implements…

Optics · Physics 2021-12-24 Mélanie M. Bay , Silvia Vignolini , Kevin Vynck

Reliable parameter extraction from experimental data is central to quantitative analysis in spectroscopy, diffraction, photoluminescence, chromatography, microscopy, and time-resolved measurements. We present FitED, a Python-based desktop…

Data Analysis, Statistics and Probability · Physics 2026-05-04 Mustafa Mahmoud Aboulsaad

We present an algorithm that enumerates all the minimal triangulations of a graph in incremental polynomial time. Consequently, we get an algorithm for enumerating all the proper tree decompositions, in incremental polynomial time, where…

Data Structures and Algorithms · Computer Science 2023-07-28 Nofar Carmeli , Batya Kenig , Benny Kimelfeld , Markus Kröll

In many fields of science, high-dimensional integration is required. Numerical methods have been developed to evaluate these complex integrals. We introduce the code i-flow, a python package that performs high-dimensional numerical…

Computational Physics · Physics 2020-08-19 Christina Gao , Joshua Isaacson , Claudius Krause

Recently, deep unfolding methods that guide the design of deep neural networks (DNNs) through iterative algorithms have received increasing attention in the field of inverse problems. Unlike general end-to-end DNNs, unfolding methods have…

Optimization and Control · Mathematics 2022-11-28 Zhuo-Xu Cui , Qingyong Zhu , Jing Cheng , Dong Liang

Multiscale transforms have become a key ingredient in many data processing tasks. With technological development, we observe a growing demand for methods to cope with non-linear data structures such as manifold values. In this paper, we…

Numerical Analysis · Mathematics 2021-08-17 Wael Mattar , Nir Sharon

We present gradiend, an open-source Python package that operationalizes the GRADIEND method for learning feature directions from factual-counterfactual MLM and CLM gradients in language models. The package provides a unified workflow for…

Computation and Language · Computer Science 2026-03-02 Jonathan Drechsel , Steffen Herbold

Developing and fielding complex systems requires proof that they are reliably correct with respect to their design and operating requirements. Especially for autonomous systems which exhibit unanticipated emergent behavior, fully…

Software Engineering · Computer Science 2024-02-28 Matthew Litton , Doron Drusinsky , James Bret Michael

Laboratory scientists are well equipped with statistical tools for univariate data, yet many phenomena of scientific interest are time-variant or otherwise multidimensional. Functional data analysis is one way of approaching such data: by…

Computation · Statistics 2023-02-28 Julian Lehrer , Mircea Teodorescu , Yohei Rosen

relentless is an open-source Python package that enables the optimization of objective functions computed using molecular dynamics simulations. It has a high-level, extensible interface for model parametrization; setting up, running, and…

Soft Condensed Matter · Physics 2024-08-07 Adithya N Sreenivasan , C. Levi Petix , Zachary M. Sherman , Michael P. Howard

This paper describes the design and use of the graph-based parsing framework and toolkit UniParse, released as an open-source python software package. UniParse as a framework novelly streamlines research prototyping, development and…

Computation and Language · Computer Science 2018-07-12 Daniel Varab , Natalie Schluter

Data unfolding is a common analysis technique used in HEP data analysis. Inspired by the deconvolution technique in the digital signal processing, a new unfolding technique based on the SVD technique and the well-known Wiener filter is…

Data Analysis, Statistics and Probability · Physics 2017-10-06 W. Tang , X. Li , X. Qian , H. Wei , C. Zhang

We consider the so-called unfolding problem in experimental high energy physics, where the goal is to estimate the true spectrum of elementary particles given observations distorted by measurement error due to the limited resolution of a…

Applications · Statistics 2014-02-03 Mikael Kuusela , Victor M. Panaretos

In the context of industrially mass-manufactured products, quality management is based on physically inspecting a small sample from a large batch and reasoning about the batch's quality conformance. When complementing physical inspections…

Applications · Statistics 2024-02-22 Simon Cramer , Tobias Müller , Robert H. Schmitt

Machine learning applications, especially in the fields of me\-di\-cine and social sciences, are slowly being subjected to increasing scrutiny. Similarly to sample size planning performed in clinical and social studies, lawmakers and…

Methodology · Statistics 2023-01-16 Antoni Klorek , Karol Roszak , Izabela Szczech , Dariusz Brzezinski

This paper introduces ENFrame, a unified data processing platform for querying and mining probabilistic data. Using ENFrame, users can write programs in a fragment of Python with constructs such as bounded-range loops, list comprehension,…

Databases · Computer Science 2013-09-03 Sebastiaan J. van Schaik , Dan Olteanu , Robert Fink
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