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We introduce the Locally Linear Latent Variable Model (LL-LVM), a probabilistic model for non-linear manifold discovery that describes a joint distribution over observations, their manifold coordinates and locally linear maps conditioned on…

Machine Learning · Statistics 2015-12-02 Mijung Park , Wittawat Jitkrittum , Ahmad Qamar , Zoltan Szabo , Lars Buesing , Maneesh Sahani

For manifold learning, it is assumed that high-dimensional sample/data points are embedded on a low-dimensional manifold. Usually, distances among samples are computed to capture an underlying data structure. Here we propose a metric…

Machine Learning · Computer Science 2019-09-20 Fenglei Fan , Ziyu Su , Yueyang Teng , Ge Wang

This survey is written in summer, 2016. The purpose of this survey is to briefly introduce nonlinear dimensionality reduction (NLDR) in data reduction. The first two NLDR were respectively published in Science in 2000 in which they solve…

Machine Learning · Computer Science 2022-03-22 Ce Ju

Geometric representation learning in preserving the intrinsic geometric and topological properties for discrete non-Euclidean data is crucial in scientific applications. Previous research generally mapped non-Euclidean discrete data into…

Machine Learning · Computer Science 2025-11-25 Zihao Chen , Wenyong Wang , Jiachen Yang , Yu Xiang

While the last five years have seen considerable progress in understanding the internal representations of deep learning models, many questions remain. This is especially true when trying to understand the impact of model design choices,…

Machine Learning · Computer Science 2023-12-08 Henry Kvinge , Grayson Jorgenson , Davis Brown , Charles Godfrey , Tegan Emerson

Despite high-dimensionality of images, the sets of images of 3D objects have long been hypothesized to form low-dimensional manifolds. What is the nature of such manifolds? How do they differ across objects and object classes? Answering…

Computer Vision and Pattern Recognition · Computer Science 2025-03-11 Benjamin Beaudett , Shenyuan Liang , Anuj Srivastava

Nonlinear dimensional reduction with the manifold assumption, often called manifold learning, has proven its usefulness in a wide range of high-dimensional data analysis. The significant impact of t-SNE and UMAP has catalyzed intense…

Machine Learning · Computer Science 2026-04-02 Jungeum Kim , Xiao Wang

The neural manifold hypothesis postulates that the activity of a neural population forms a low-dimensional manifold whose structure reflects that of the encoded task variables. In this work, we combine topological deep generative models and…

Neurons and Cognition · Quantitative Biology 2023-04-26 Francisco Acosta , Sophia Sanborn , Khanh Dao Duc , Manu Madhav , Nina Miolane

Measuring the similarity between data points often requires domain knowledge, which can in parts be compensated by relying on unsupervised methods such as latent-variable models, where similarity/distance is estimated in a more compact…

Machine Learning · Statistics 2020-08-13 Nutan Chen , Alexej Klushyn , Francesco Ferroni , Justin Bayer , Patrick van der Smagt

We present a signal representation framework called the sparse manifold transform that combines key ideas from sparse coding, manifold learning, and slow feature analysis. It turns non-linear transformations in the primary sensory signal…

Machine Learning · Statistics 2018-12-04 Yubei Chen , Dylan M. Paiton , Bruno A. Olshausen

The abundance of data collected by sensors in Internet of Things (IoT) devices, and the success of deep neural networks in uncovering hidden patterns in time series data have led to mounting privacy concerns. This is because private and…

Machine Learning · Computer Science 2022-06-02 Omid Hajihassani , Omid Ardakanian , Hamzeh Khazaei

We propose a manifold matching approach to generative models which includes a distribution generator (or data generator) and a metric generator. In our framework, we view the real data set as some manifold embedded in a high-dimensional…

Computer Vision and Pattern Recognition · Computer Science 2021-08-30 Mengyu Dai , Haibin Hang

The emergence of low-cost sensor architectures for diverse modalities has made it possible to deploy sensor arrays that capture a single event from a large number of vantage points and using multiple modalities. In many scenarios, these…

Machine Learning · Computer Science 2009-12-09 Mark A. Davenport , Chinmay Hegde , Marco F. Duarte , Richard G. Baraniuk

This paper introduces a new probabilistic framework for supervised learning in neural systems. It is designed to model complex, uncertain systems whose random outputs are strongly non-Gaussian given deterministic inputs. The architecture…

Machine Learning · Statistics 2025-12-12 Christian Soize

In the study of high-dimensional data, it is often assumed that the data set possesses an underlying lower-dimensional structure. A practical model for this structure is an embedded compact manifold with boundary. Since the underlying…

Machine Learning · Statistics 2025-08-22 Pei-Cheng Kuo , Nan Wu

Unsupervised feature learning often finds low-dimensional embeddings that capture the structure of complex data. For tasks for which prior expert topological knowledge is available, incorporating this into the learned representation may…

Machine Learning · Computer Science 2022-03-08 Robin Vandaele , Bo Kang , Jefrey Lijffijt , Tijl De Bie , Yvan Saeys

Real-world data with underlying structure, such as pictures of faces, are hypothesized to lie on a low-dimensional manifold. This manifold hypothesis has motivated state-of-the-art generative algorithms that learn low-dimensional data…

Machine Learning · Statistics 2022-04-28 Edmond Cunningham , Renos Zabounidis , Abhinav Agrawal , Madalina Fiterau , Daniel Sheldon

We propose a novel approach for preserving topological structures of the input space in latent representations of autoencoders. Using persistent homology, a technique from topological data analysis, we calculate topological signatures of…

Machine Learning · Computer Science 2021-06-01 Michael Moor , Max Horn , Bastian Rieck , Karsten Borgwardt

Autoencoders have demonstrated remarkable success in learning low-dimensional latent features of high-dimensional data across various applications. Assuming that data are sampled near a low-dimensional manifold, we employ chart…

Machine Learning · Statistics 2023-10-26 Hao Liu , Alex Havrilla , Rongjie Lai , Wenjing Liao

Manifold learning based methods have been widely used for non-linear dimensionality reduction (NLDR). However, in many practical settings, the need to process streaming data is a challenge for such methods, owing to the high computational…

Machine Learning · Statistics 2018-03-20 Suchismit Mahapatra , Varun Chandola