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In this work we compare Monte Carlo (MC) simulations of electron transport properties with reflection electron energy loss measurements in diamond and graphite films. We assess the impact of different approximations of the dielectric…

Single strand breaks are induced in DNA plasmids, pBR322 and pUC19, in aqueous media exposed to strong fields generated using ultrashort laser pulses (820 nm wavelength, 45 fs pulse duration, 1 kHz repetition rate) at intensities of 1-12 TW…

Biological Physics · Physics 2015-05-27 J. S. D'Souza , J. A. Dharmadhikari , A. K. Dharmadhikari , B. J. Rao , D. Mathur

At the KATRIN experiment, the electron antineutrino mass is inferred from the shape of the $\beta$-decay spectrum of tritium. Important systematic effects in the Windowless Gaseous Tritium Source (WGTS) of the experiment include the energy…

Instrumentation and Methods for Astrophysics · Physics 2022-10-05 Jonas Kellerer , Felix Spanier

A set of physics models for nanodosimetry simulation is being re-engineered for use in Geant4-based simulations. This extension of Geant4 capabilities is part of a larger scale R&D project for multi-scale simulation involving adaptable,…

Computational Physics · Physics 2009-12-10 E. Gargioni , V. Grichine , M. G. Pia

Understanding the three-dimensional (3D) structure and stability of DNA is fundamental for its biological function and the design of novel drugs. In this study, we introduce an improved coarse-grained (CG) model, incorporating a more…

Soft Condensed Matter · Physics 2025-01-22 Xunxun Wang , Ya-Zhou Shi

The electrical conduction properties of G4-DNA are investigated using a hybrid approach, which combines electronic structure calculations, molecular dynamics (MD) simulations, and the formulation of an effective tight-binding model…

The highly energetic electrons in a transmission electron microscope (TEM) can alter or even completely destroy the structure of samples before sufficient information can be obtained. This is especially problematic in the case of zeolites,…

Materials Science · Physics 2021-05-05 Abner Velazco , Daen Jannis , Armand Béché , Johan Verbeeck

The objective of the present study was to develop an understanding of short single-stranded DNA (ssDNA) to assist the development of new DNA-based biosensors. A ssDNA model containing twelve bases was constructed from the 130-145 codon…

Biological Physics · Physics 2012-07-30 Subhasish Chatterjee , Bonnie Gersten , Siddarth Thakur , Alexander Burin

We present results of atomic-level simulations of damage formation along the paths of swift heavy ions (SHI) decelerated in the electronic stopping regime in amorphous polyethylene. The applied model combines the Monte-Carlo code TREKIS-3,…

Materials Science · Physics 2024-09-18 P. Babaev , R. Voronkov , A. E. Volkov

Low-energy electrons offer a unique possibility for long exposure imaging of individual biomolecules without significant radiation damage. In addition, low-energy electrons exhibit high sensitivity to local potentials and thus can be…

Mesoscale and Nanoscale Physics · Physics 2019-08-27 Tatiana Latychevskaia , Conrad Escher , William Andregg , Michael Andregg , Hans-Werner Fink

We apply a recently-developed coarse-grained model of DNA, designed to capture the basic physics of nanotechnological DNA systems, to the study of a `burnt-bridges' DNA motor consisting of a single-stranded cargo that steps processively…

Biological Physics · Physics 2014-11-14 Petr Šulc , Thomas E. Ouldridge , Flavio Romano , Jonathan P. K. Doye , Ard A. Louis

This work reviews the concepts of an event used in micro- and nanodosimetry and analyzes how single event distributions could theoretically be derived from probability distributions related to interactions of the primary particle which…

Medical Physics · Physics 2025-02-28 Hans Rabus , Leo Thomas

The measurement of the beta asymmetry parameter in nuclear beta decay is a potentially very sensitive tool to search for non V-A components in the charge-changing weak interaction. To reach the required precision (percent level) all effects…

We present a Monte Carlo code dedicated to the simulation of bremsstrahlung arising in collisions of polarized electrons with thin target foils. The program consists of an electron transport algorithm taking into account elastic…

Atomic Physics · Physics 2015-06-05 G. Weber , R. Märtin , A. Surzhykov , M. Yasuda , V. A. Yerokhin , Th. Stöhlker

The Monte Carlo simulation of the electron transport through thin slabs is studied with five general purpose codes: PENELOPE, GEANT3, GEANT4, EGSnrc and MCNPX. The different material foils analyzed in the old experiments of Kulchitsky and…

Medical Physics · Physics 2008-11-26 M. Vilches , S. Garcia-Pareja , R. Guerrero , M. Anguiano , A. M. Lallena

The energy losses of energetic ions in materials depend on both nuclear and electronic interactions. In channeling geometries, the stopping effect of these interactions can be highly reduced, resulting in deeper ion penetration.…

A Monte Carlo simulator is presented to reproduce data of nucleus-nucleus interactions at high energies. The program is designed in a microscopic point of view, where the cascade approach is applied. Moreover, each nucleon from both the…

High Energy Physics - Phenomenology · Physics 2007-05-23 N. M. Hassan , N. El-Harby , M. T. Hussein

The dynamic structure factor (DSF) is a central quantity for interpreting a vast array of inelastic scattering experiments in chemistry and materials science, but its accurate simulation is a considerable challenge for classical…

We report on the first detailed measurements of electron backscattering from low Z targets at energies up to 124 keV. Both energy and angular distributions of the backscattered electrons are measured and compared with electron transport…

Nuclear Experiment · Physics 2008-11-26 J. W. Martin , J. Yuan , S. A. Hoedl , B. W. Filippone , D. Fong , T. M. Ito , E. Lin , B. Tipton , A. R. Young

Motivated by the wide ranging experimental results on the conductivity of DNA, we have investigated extraordinary configurations and chemical environments in which DNA might become a true molecular wire, perticularly from enhanced…

Soft Condensed Matter · Physics 2009-09-29 R. G. Endres , D. L. Cox , R. R. P. Singh