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In comparison to graphs, combinatorial methods for the isomorphism problem of finite groups are less developed than algebraic ones. To be able to investigate the descriptive complexity of finite groups and the group isomorphism problem, we…

Logic in Computer Science · Computer Science 2021-11-24 Jendrik Brachter , Pascal Schweitzer

In this paper we explore the design of sequent calculi operating on graphs. For this purpose, we introduce a set of logical connectives allowing us to extend the correspondence between cographs and classical propositional formulas to any…

Logic in Computer Science · Computer Science 2024-02-13 Matteo Acclavio

Random factor graphs provide a powerful framework for the study of inference problems such as decoding problems or the stochastic block model. Information-theoretically the key quantity of interest is the mutual information between the…

Discrete Mathematics · Computer Science 2021-04-27 Amin Coja-Oghlan , Max Hahn-Klimroth , Philipp Loick , Noela Müller , Konstantinos Panagiotou , Matija Pasch

This paper studies high-dimensional regression with two-way structured data. To estimate the high-dimensional coefficient vector, we propose the generalized matrix decomposition regression (GMDR) to efficiently leverage any auxiliary…

Methodology · Statistics 2023-02-17 Yue Wang , Ali Shojaie , Timothy W. Randolph , Parker Knight , Jing Ma

The task of data integration for multi-omics data has emerged as a powerful strategy to unravel the complex biological underpinnings of cancer. Recent advancements in graph neural networks (GNNs) offer an effective framework to model…

Machine Learning · Computer Science 2025-06-24 Payam Zohari , Mostafa Haghir Chehreghani

This article contributes to the discussion on the relationship between the Neyman-Rubin and the graphical frameworks for causal inference. We present specific examples of data-generating mechanisms - such as those involving undirected or…

Methodology · Statistics 2025-12-11 Tetiana Gorbach , Xavier de Luna , Juha Karvanen , Ingeborg Waernbaum

We introduce an architecture based on deep hierarchical decompositions to learn effective representations of large graphs. Our framework extends classic R-decompositions used in kernel methods, enabling nested part-of-part relations. Unlike…

Machine Learning · Computer Science 2024-03-19 Francesco Orsini , Daniele Baracchi , Paolo Frasconi

Counterfactual examples have emerged as an effective approach to produce simple and understandable post-hoc explanations. In the context of graph classification, previous work has focused on generating counterfactual explanations by…

Machine Learning · Computer Science 2023-07-28 Carlo Abrate , Giulia Preti , Francesco Bonchi

Graphs are ubiquitous data structures for representing interactions between entities. With an emphasis on the use of graphs to represent chemical molecules, we explore the task of learning to generate graphs that conform to a distribution…

Machine Learning · Computer Science 2019-03-08 Qi Liu , Miltiadis Allamanis , Marc Brockschmidt , Alexander L. Gaunt

Many systems comprising entities in interactions can be represented as graphs, whose structure gives significant insights about how these systems work. Network theory has undergone further developments, in particular in relation to…

Data Analysis, Statistics and Probability · Physics 2016-06-14 Ronan Hamon , Pierre Borgnat , Patrick Flandrin , Céline Robardet

Many current challenges involve understanding the complex dynamical interplay between the constituents of systems. Typically, the number of such constituents is high, but only limited data sources on them are available. Conventional…

Populations and Evolution · Quantitative Biology 2021-12-17 Jana C. Massing , Thilo Gross

The widespread use of multi-sensor technology and the emergence of big datasets has highlighted the limitations of standard flat-view matrix models and the necessity to move towards more versatile data analysis tools. We show that…

Numerical Analysis · Computer Science 2015-06-19 A. Cichocki , D. Mandic , A-H. Phan , C. Caiafa , G. Zhou , Q. Zhao , L. De Lathauwer

A graph is Cartesian decomposable if it is isomorphic to a Cartesian product of (more than one) strictly smaller graphs, each of which has more than one vertex and admits no such decomposition. These smaller graphs are called the…

Combinatorics · Mathematics 2016-12-21 Geoffrey Pearce , Cheryl E Praeger

There has been a lot of recent interest in mining patterns from graphs. Often, the exact structure of the patterns of interest is not known. This happens, for example, when molecular structures are mined to discover fragments useful as…

Data Structures and Algorithms · Computer Science 2007-05-23 Pavel Dmitriev , Carl Lagoze

The theory of graphons has proven to be a powerful tool in many areas of graph theory. In this paper, we introduce several foundational aspects of the theory of digraphons -- asymmetric two-variable functions that arise as limits of…

Combinatorics · Mathematics 2025-12-16 Jan Hladký , Petr Savický

In this paper, we introduce two new forms of the dual Hartwig-Spindelb{\"o}ck decomposition and employ them to derive explicit representations for several classes of dual generalized inverses. Building on these representations, we further…

Rings and Algebras · Mathematics 2026-02-10 Tan Mei , Kezheng Zuo , Hui Yan

Comparing networks is essential for a number of downstream tasks, from clustering to anomaly detection. Despite higher-order interactions being critical for understanding the dynamics of complex systems, traditional approaches for network…

Physics and Society · Physics 2025-11-03 Helcio Felippe , Alec Kirkley , Federico Battiston

Real-world networks exhibit prominent hierarchical and modular structures, with various subgraphs as building blocks. Most existing studies simply consider distinct subgraphs as motifs and use only their numbers to characterize the…

Social and Information Networks · Computer Science 2019-12-17 Qi Xuan , Jinhuan Wang , Minghao Zhao , Junkun Yuan , Chenbo Fu , Zhongyuan Ruan , Guanrong Chen

We introduce \textit{dual graph diagrams} representing oriented knots and links. We use these combinatorial structures to define corresponding algebraic structures we call \textit{biquasiles} whose axioms are motivated by dual graph…

Geometric Topology · Mathematics 2017-09-05 Deanna Needell , Sam Nelson

We present an innovative framework for traffic dynamics analysis using High-Order Evolving Graphs, designed to improve spatio-temporal representations in autonomous driving contexts. Our approach constructs temporal bidirectional bipartite…

Computer Vision and Pattern Recognition · Computer Science 2024-09-19 Aditya Humnabadkar , Arindam Sikdar , Benjamin Cave , Huaizhong Zhang , Paul Bakaki , Ardhendu Behera