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We present a new tool for data analysis: persistence discrete homology, which is well-suited to analyze filtrations of graphs. In particular, we provide a novel way of representing high-dimensional data as a filtration of graphs using…

Algebraic Topology · Mathematics 2025-06-23 Chris Kapulkin , Nathan Kershaw

Human reasoning in visual analytics of data networks relies mainly on the quality of visual perception and the capability of interactively exploring the data from different facets. Visual quality strongly depends on networks' size and…

Human-Computer Interaction · Computer Science 2017-12-13 Adam Agocs , Dimitrios Dardanis , Jean-Marie Le Goff , Dimitrios Proios

Many applications collect a large number of time series, for example, the financial data of companies quoted in a stock exchange, the health care data of all patients that visit the emergency room of a hospital, or the temperature sequences…

Information Theory · Computer Science 2017-02-09 Jonathan Mei , José M. F. Moura

Network structure optimization is a fundamental task in complex network analysis. However, almost all the research on Bayesian optimization is aimed at optimizing the objective functions with vectorial inputs. In this work, we first present…

Machine Learning · Statistics 2018-11-07 Jiaxu Cui , Bo Yang

We present a principle-based analysis of contribution functions for quantitative bipolar argumentation graphs that quantify the contribution of one argument to another. The introduced principles formalise the intuitions underlying different…

Artificial Intelligence · Computer Science 2024-06-17 Timotheus Kampik , Nico Potyka , Xiang Yin , Kristijonas Čyras , Francesca Toni

Partition- and moment functions for a general (not necessarily Gaussian) functional measure that is perturbed by a Gibbs factor are calculated using generalized Feynman graphs. From the graphical calculus, a new notion of Wick ordering…

Mathematical Physics · Physics 2007-05-23 S. H. Djah , H. Gottschalk , H. Ouerdiane

Recently there has been significant interest in using causal modelling techniques to understand the structure of physical theories. However, the notion of `causation' is limiting - insisting that a physical theory must involve causal…

History and Philosophy of Physics · Physics 2023-07-24 Mordecai Waegell , Kelvin J. McQueen , Emily C. Adlam

Graphical models can represent a multivariate distribution in a convenient and accessible form as a graph. Causal models can be viewed as a special class of graphical models that not only represent the distribution of the observed system…

Methodology · Statistics 2017-06-29 Christina Heinze-Deml , Marloes H. Maathuis , Nicolai Meinshausen

Relationships between entities in datasets are often of multiple nature, like geographical distance, social relationships, or common interests among people in a social network, for example. This information can naturally be modeled by a set…

Machine Learning · Computer Science 2015-08-31 Xiaowen Dong , Pascal Frossard , Pierre Vandergheynst , Nikolai Nefedov

Motivated by very large-scale communication networks, we newly introduce exponentiation of graphs. Using the exponential operation on graphs, we can construct various graphs of multi-exponential order with logarithmic diameter. We show that…

Combinatorics · Mathematics 2025-01-28 Toru Hasunuma

High-dimensional data analysis typically focuses on low-dimensional structure, often to aid interpretation and computational efficiency. Graphical models provide a powerful methodology for learning the conditional independence structure in…

Methodology · Statistics 2024-09-13 Maria De Iorio , Willem van den Boom , Alexandros Beskos , Ajay Jasra , Andrea Cremaschi

Representing various networked data as multiplex networks, networks of networks and other multilayer networks can reveal completely new types of structures in these system. We introduce a general and principled graphlet framework for…

Physics and Society · Physics 2022-04-22 Sallamari Sallmen , Tarmo Nurmi , Mikko Kivelä

Algorithmicists are well-aware that fast dynamic programming algorithms are very often the correct choice when computing on compositional (or even recursive) graphs. Here we initiate the study of how to generalize this folklore intuition to…

Computational Complexity · Computer Science 2023-10-05 Ernst Althaus , Benjamin Merlin Bumpus , James Fairbanks , Daniel Rosiak

Machine learning on graphs, especially using graph neural networks (GNNs), has seen a surge in interest due to the wide availability of graph data across a broad spectrum of disciplines, from life to social and engineering sciences. Despite…

Gaussian graphical models provide a powerful framework to reveal the conditional dependency structure between multivariate variables. The process of uncovering the conditional dependency network is known as structure learning. Bayesian…

Methodology · Statistics 2024-07-30 Lucas Vogels , Reza Mohammadi , Marit Schoonhoven , S. Ilker Birbil

We present a comprehensive study of graphical log-linear models for contingency tables. High dimensional contingency tables arise in many areas such as computational biology, collection of survey and census data and others. Analysis of…

Methodology · Statistics 2016-03-15 Niharika Gauraha

We develop a shape analysis for reasoning about relational properties of data structures. Both the concrete and the abstract domain are represented by hypergraphs. The analysis is parameterized by user-supplied indexed graph grammars to…

Programming Languages · Computer Science 2018-04-20 Hannah Arndt , Christina Jansen , Christoph Matheja , Thomas Noll

In two previous papers, we exposed a combinatorial approach to the program of Geometry of Interaction, a program initiated by Jean-Yves Girard. The strength of our approach lies in the fact that we interpret proofs by simpler structures -…

Logic in Computer Science · Computer Science 2015-09-01 Thomas Seiller

A graph is a data structure composed of dots (i.e. vertices) and lines (i.e. edges). The dots and lines of a graph can be organized into intricate arrangements. The ability for a graph to denote objects and their relationships to one…

Data Structures and Algorithms · Computer Science 2010-09-07 Marko A. Rodriguez , Peter Neubauer

We develop a higher order generalization of the LQ decomposition and show that this decomposition plays an important role in likelihood-based estimation and testing for separable, or Kronecker structured, covariance models, such as the…

Statistics Theory · Mathematics 2018-06-20 David C. Gerard , Peter D. Hoff