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Single molecule localization microscopy is widely used in biological research for measuring the nanostructures of samples smaller than the diffraction limit. This study uses multifocal plane microscopy and addresses the 3D single molecule…

Computer Vision and Pattern Recognition · Computer Science 2020-01-08 Toshimitsu Aritake , Hideitsu Hino , Shigeyuki Namiki , Daisuke Asanuma , Kenzo Hirose , Noboru Murata

Accurate and reliable brain tumor segmentation is a critical component in cancer diagnosis, treatment planning, and treatment outcome evaluation. Build upon successful deep learning techniques, a novel brain tumor segmentation method is…

Computer Vision and Pattern Recognition · Computer Science 2017-11-13 Xiaomei Zhao , Yihong Wu , Guidong Song , Zhenye Li , Yazhuo Zhang , Yong Fan

Deep learning has been successfully applied to recognizing both natural images and medical images. However, there remains a gap in recognizing 3D neuroimaging data, especially for psychiatric diseases such as schizophrenia and depression…

Image and Video Processing · Electrical Eng. & Systems 2022-11-23 Mengjiao Hu , Xudong Jiang , Kang Sim , Juan Helen Zhou , Cuntai Guan

Automated surface segmentation is important and challenging in many medical image analysis applications. Recent deep learning based methods have been developed for various object segmentation tasks. Most of them are a classification based…

Computer Vision and Pattern Recognition · Computer Science 2019-09-25 Leixin Zhou , Zisha Zhong , Abhay Shah , Bensheng Qiu , John Buatti , Xiaodong Wu

Automated methods for breast cancer detection have focused on 2D mammography and have largely ignored 3D digital breast tomosynthesis (DBT), which is frequently used in clinical practice. The two key challenges in developing automated…

Computer Vision and Pattern Recognition · Computer Science 2020-02-28 Yu Zhang , Xiaoqin Wang , Hunter Blanton , Gongbo Liang , Xin Xing , Nathan Jacobs

Current biological and medical research is aimed at obtaining a detailed spatiotemporal map of a live cell's interior to describe and predict cell's physiological state. We present here an algorithm for complete 3-D modelling of cellular…

Quantitative Methods · Quantitative Biology 2017-04-03 Renata Rychtarikova , Tomas Nahlik , Kevin Shi , Daria Malakhova , Petr Machacek , Rebecca Smaha , Jan Urban , Dalibor Stys

We present an end-to-end Convolutional Neural Network (CNN) approach for 3D reconstruction of knee bones directly from two bi-planar X-ray images. Clinically, capturing the 3D models of the bones is crucial for surgical planning, implant…

Image and Video Processing · Electrical Eng. & Systems 2020-08-13 Yoni Kasten , Daniel Doktofsky , Ilya Kovler

Cell segmentation in microscopy is a challenging problem, since cells are often asymmetric and densely packed. This becomes particularly challenging for extremely large images, since manual intervention and processing time can make…

Image and Video Processing · Electrical Eng. & Systems 2019-06-19 Mahsa Lotfollahi , Sebastian Berisha , Leila Saadatifard , Laura Montier , Jokubas Ziburkus , David Mayerich

Like other applications in computer vision, medical image segmentation has been most successfully addressed using deep learning models that rely on the convolution operation as their main building block. Convolutions enjoy important…

Image and Video Processing · Electrical Eng. & Systems 2022-04-05 Davood Karimi , Serge Vasylechko , Ali Gholipour

Remarkable progress has been made in image recognition, primarily due to the availability of large-scale annotated datasets and the revival of deep CNN. CNNs enable learning data-driven, highly representative, layered hierarchical image…

Computer Vision and Pattern Recognition · Computer Science 2016-02-11 Hoo-Chang Shin , Holger R. Roth , Mingchen Gao , Le Lu , Ziyue Xu , Isabella Nogues , Jianhua Yao , Daniel Mollura , Ronald M. Summers

The ability to automatically learn task specific feature representations has led to a huge success of deep learning methods. When large training data is scarce, such as in medical imaging problems, transfer learning has been very effective.…

Computer Vision and Pattern Recognition · Computer Science 2017-04-21 Hariharan Ravishankar , Prasad Sudhakar , Rahul Venkataramani , Sheshadri Thiruvenkadam , Pavan Annangi , Narayanan Babu , Vivek Vaidya

We present a computational imaging mode for large scale electron microscopy data, which retrieves a complex wave from noisy/sparse intensity recordings using a deep learning approach and subsequently reconstructs an image of the specimen…

Materials Science · Physics 2022-02-28 Thomas Friedrich , Chu-Ping Yu , Johan Verbeek , Timothy Pennycook , Sandra Van Aert

Lacunes of presumed vascular origin (lacunes) are associated with an increased risk of stroke, gait impairment, and dementia and are a primary imaging feature of the small vessel disease. Quantification of lacunes may be of great importance…

Fabric image retrieval is beneficial to many applications including clothing searching, online shopping and cloth modeling. Learning pairwise image similarity is of great importance to an image retrieval task. With the resurgence of…

Computer Vision and Pattern Recognition · Computer Science 2018-01-01 Daiguo Deng , Ruomei Wang , Hefeng Wu , Huayong He , Qi Li , Xiaonan Luo

This paper addresses the problem of quantifying biomarkers in multi-stained tissues, based on color and spatial information. A deep learning based method that can automatically localize and quantify the cells expressing biomarker(s) in a…

Tissues and Organs · Quantitative Biology 2017-01-02 Fahime Sheikhzadeh , Martial Guillaud , Rabab K. Ward

We focus on the word-level visual lipreading, which requires recognizing the word being spoken, given only the video but not the audio. State-of-the-art methods explore the use of end-to-end neural networks, including a shallow (up to three…

Computer Vision and Pattern Recognition · Computer Science 2019-07-22 Xinshuo Weng , Kris Kitani

Face recognition (FR) methods report significant performance by adopting the convolutional neural network (CNN) based learning methods. Although CNNs are mostly trained by optimizing the softmax loss, the recent trend shows an improvement…

Computer Vision and Pattern Recognition · Computer Science 2017-04-10 Abul Hasnat , Julien Bohné , Jonathan Milgram , Stéphane Gentric , Liming Chen

Deep convolutional neural networks (CNNs) are state-of-the-art for semantic image segmentation, but typically require many labeled training samples. Obtaining 3D segmentations of medical images for supervised training is difficult and labor…

Computer Vision and Pattern Recognition · Computer Science 2019-07-29 Zhenlin Xu , Marc Niethammer

With the rapid development of deep learning, a variety of change detection methods based on deep learning have emerged in recent years. However, these methods usually require a large number of training samples to train the network model, so…

Computer Vision and Pattern Recognition · Computer Science 2023-11-08 Weidong Yan , Pei Yan , Li Cao

Achieving robust multi-person 2D body landmark localization and pose estimation is essential for human behavior and interaction understanding as encountered for instance in HRI settings. Accurate methods have been proposed recently, but…

Computer Vision and Pattern Recognition · Computer Science 2019-12-03 Angel Martínez-González , Michael Villamizar , Olivier Canévet , Jean-Marc Odobez
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