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Large numbers of MS/MS peptide spectra generated in proteomics experiments require efficient, sensitive and specific algorithms for peptide identification. In the Open Mass Spectrometry Search Algorithm [OMSSA], specificity is calculated by…

Quantitative Methods · Quantitative Biology 2007-05-23 Lewis Y. Geer , Sanford P. Markey , Jeffrey A. Kowalak , Lukas Wagner , Ming Xu , Dawn M. Maynard , Xiaoyu Yang , Wenyao Shi , Stephen H. Bryant

There is extensive evidence that biological neural networks encode information in the precise timing of the spikes generated and transmitted by neurons, which offers several advantages over rate-based codes. Here we adopt a vector space…

Neurons and Cognition · Quantitative Biology 2019-07-16 Dorian Florescu , Daniel Coca

Online learning with multiple kernels has gained increasing interests in recent years and found many applications. For classification tasks, Online Multiple Kernel Classification (OMKC), which learns a kernel based classifier by seeking the…

Machine Learning · Computer Science 2015-11-19 Jing Lu , Steven C. H. Hoi , Doyen Sahoo , Peilin Zhao

Online Learning to Rank (OLTR) methods optimize rankers based on user interactions. State-of-the-art OLTR methods are built specifically for linear models. Their approaches do not extend well to non-linear models such as neural networks. We…

Information Retrieval · Computer Science 2018-09-25 Harrie Oosterhuis , Maarten de Rijke

As the size and richness of available datasets grow larger, the opportunities for solving increasingly challenging problems with algorithms learning directly from data grow at the same pace. Consequently, the capability of learning…

Machine Learning · Computer Science 2019-12-13 Raffaello Camoriano

Accurate predictions of peptide retention times (RT) in liquid chromatography have many applications in mass spectrometry-based proteomics. Herein, we present DeepRT, a deep learning based software for peptide retention time prediction.…

Quantitative Methods · Quantitative Biology 2017-05-17 Chunwei Ma , Zhiyong Zhu , Jun Ye , Jiarui Yang , Jianguo Pei , Shaohang Xu , Ruo Zhou , Chang Yu , Fan Mo , Bo Wen , Siqi Liu

Large-scale supervised classification algorithms, especially those based on deep convolutional neural networks (DCNNs), require vast amounts of training data to achieve state-of-the-art performance. Decreasing this data requirement would…

Computer Vision and Pattern Recognition · Computer Science 2016-06-15 Maya Kabkab , Azadeh Alavi , Rama Chellappa

Kernel-based methods enjoy powerful generalization capabilities in handling a variety of learning tasks. When such methods are provided with sufficient training data, broadly-applicable classes of nonlinear functions can be approximated…

Machine Learning · Statistics 2017-12-29 Fatemeh Sheikholeslami , Dimitris Berberidis , Georgios B. Giannakis

Deep neural networks (DNNs) demonstrate significant advantages in improving ranking performance in retrieval tasks. Driven by the recent technical developments in optimization and generalization of DNNs, learning a neural ranking model…

Information Retrieval · Computer Science 2022-09-27 Yiling Jia , Hongning Wang

Joint channel estimation and signal detection (JCESD) is crucial in orthogonal frequency division multiplexing (OFDM) systems, but traditional algorithms perform poorly in low signal-to-noise ratio (SNR) scenarios. Deep learning (DL)…

Signal Processing · Electrical Eng. & Systems 2024-06-24 Haocheng Ju , Haimiao Zhang , Lin Li , Xiao Li , Bin Dong

Online learning is the cornerstone of applications like recommendation and advertising systems, where models continuously adapt to shifting data distributions. Model training for such systems is remarkably expensive, a cost that multiplies…

Machine Learning · Computer Science 2025-12-02 Berivan Isik , Matthew Fahrbach , Dima Kuzmin , Nicolas Mayoraz , Emil Praun , Steffen Rendle , Raghavendra Vasudeva

Continual learning in online scenario aims to learn a sequence of new tasks from data stream using each data only once for training, which is more realistic than in offline mode assuming data from new task are all available. However, this…

Computer Vision and Pattern Recognition · Computer Science 2021-10-19 Jiangpeng He , Fengqing Zhu

The increased computerization in recent years has resulted in the production of a variety of different software, however measures need to be taken to ensure that the produced software isn't defective. Many researchers have worked in this…

Software Engineering · Computer Science 2023-04-06 Param Khakhar and , Rahul Kumar Dubey

Most real-world datasets, and particularly those collected from physical systems, are full of noise, packet loss, and other imperfections. However, most specification mining, anomaly detection and other such algorithms assume, or even…

Machine Learning · Computer Science 2019-04-12 Ilia Sucholutsky , Apurva Narayan , Matthias Schonlau , Sebastian Fischmeister

In this brief paper, we investigate online training of Long Short Term Memory (LSTM) architectures in a distributed network of nodes, where each node employs an LSTM based structure for online regression. In particular, each node…

Signal Processing · Electrical Eng. & Systems 2020-02-25 Tolga Ergen , Suleyman Serdar Kozat

The stringent memory and power constraints required in edge-computing sensory-processing applications have made event-driven neuromorphic systems a promising technology. On-chip online learning provides such systems the ability to learn the…

Emerging Technologies · Computer Science 2022-01-26 Matteo Cartiglia , Arianna Rubino , Shyam Narayanan , Charlotte Frenkel , Germain Haessig , Giacomo Indiveri , Melika Payvand

As more data are produced each day, and faster, data stream mining is growing in importance, making clear the need for algorithms able to fast process these data. Data stream mining algorithms are meant to be solutions to extract knowledge…

With the development of federated learning (FL), mobile devices (MDs) are able to train their local models with private data and sends them to a central server for aggregation, thereby preventing sensitive raw data leakage. In this paper,…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-06-15 Shunfeng Chu , Jun Li , Jianxin Wang , Zhe Wang , Ming Ding , Yijin Zang , Yuwen Qian , Wen Chen

Offline reinforcement-learning (RL) algorithms learn to make decisions using a given, fixed training dataset without online data collection. This problem setting is captivating because it holds the promise of utilizing previously collected…

Machine Learning · Computer Science 2022-12-07 Dan Elbaz , Gal Novik , Oren Salzman

Existing research into online multi-label classification, such as online sequential multi-label extreme learning machine (OSML-ELM) and stochastic gradient descent (SGD), has achieved promising performance. However, these works do not take…

Machine Learning · Computer Science 2020-06-15 Xiuwen Gong , Jiahui Yang , Dong Yuan , Wei Bao