Related papers: FPGA Acceleration of Short Read Alignment

Training deep neural networks (DNNs) requires significantly more computation and memory than inference, making runtime adaptation of DNNs challenging on resource-limited IoT platforms. We propose InstantFT, an FPGA-based method for…

Large language models (LLMs) have demonstrated exceptional proficiency in understanding and generating human language, but efficient inference on resource-constrained embedded devices remains challenging due to large model sizes and…

Offloading compute intensive nested loops to execute on FPGA accelerators have been demonstrated by numerous researchers as an effective performance enhancement technique across numerous application domains. To construct such accelerators…

Implementing convolutional neural networks (CNNs) on field-programmable gate arrays (FPGAs) has emerged as a promising alternative to GPUs, offering lower latency, greater power efficiency and greater flexibility. However, this development…

We improve on GenASM, a recent algorithm for genomic sequence alignment, by significantly reducing its memory footprint and bandwidth requirement. Our algorithmic improvements reduce the memory footprint by 24$\times$ and the number of…

Large language models (LLMs) have demonstrated remarkable abilities in natural language processing. However, their deployment on resource-constrained embedded devices remains difficult due to memory and computational demands. In this paper,…

Memory bandwidth is known to be a performance bottleneck for FPGA accelerators, especially when they deal with large multi-dimensional data-sets. A large body of work focuses on reducing of off-chip transfers, but few authors try to improve…

Deep Convolutional Neural Networks (CNNs) have achieved state-of-the-art performance in a wide range of applications. However, deeper CNN models, which are usually computation consuming, are widely required for complex Artificial…

Nowadays most research in visual recognition using Convolutional Neural Networks (CNNs) follows the "deeper model with deeper confidence" belief to gain a higher recognition accuracy. At the same time, deeper model brings heavier…

Convolutional neural nets (CNNs) have become a practical means to perform vision tasks, particularly in the area of image classification. FPGAs are well known to be able to perform convolutions efficiently, however, most recent efforts to…

The Regularized Nonlinear Acceleration (RNA) algorithm is an acceleration method capable of improving the rate of convergence of many optimization schemes such as gradient descend, SAGA or SVRG. Until now, its analysis is limited to convex…

A genome read data set can be quickly and efficiently remapped from one reference to another similar reference (e.g., between two reference versions or two similar species) using a variety of tools, e.g., the commonly-used CrossMap tool.…

When trained as generative models, Deep Learning algorithms have shown exceptional performance on tasks involving high dimensional data such as image denoising and super-resolution. In an increasingly connected world dominated by mobile and…

This work introduces a spike-based wearable analytics system utilizing Spiking Neural Networks (SNNs) deployed on an In-memory Computing engine based on RRAM crossbars, which are known for their compactness and energy-efficiency. Given the…

The increasing demand for real-time, low-latency artificial intelligence applications has propelled the use of Field-Programmable Gate Arrays (FPGAs) for Convolutional Neural Network (CNN) implementations. FPGAs offer reconfigurability,…

Recent technological advances have proliferated the available computing power, memory, and speed of modern Central Processing Units (CPUs), Graphics Processing Units (GPUs), and Field Programmable Gate Arrays (FPGAs). Consequently, the…

FPGAs have distinct advantages as a technology for deploying deep neural networks (DNNs) at the edge. Lookup Table (LUT) based networks, where neurons are directly modeled using LUTs, help maximize this promise of offering ultra-low latency…

There are currently plenty of programs available for mapping short sequences (reads) to a genome. Most of them, however, including such popular and actively developed programs as Bowtie, BWA, TopHat and many others, are based on…

Real-time Deep Neural Network (DNN) inference with low-latency requirement has become increasingly important for numerous applications in both cloud computing (e.g., Apple's Siri) and edge computing (e.g., Google/Waymo's driverless car).…

Though CNNs are highly parallel workloads, in the absence of efficient on-chip memory reuse techniques, an accelerator for them quickly becomes memory bound. In this paper, we propose a CNN accelerator design for inference that is able to…