Related papers: Entropy rates for Horton self-similar trees

Imitating a recently introduced invariant of trees, we initiate the study of the inducibility of $d$-ary trees (rooted trees whose vertex outdegrees are bounded from above by $d\geq 2$) with a given number of leaves. We determine the exact…

The reconstruction of a central tendency `species tree' from a large number of conflicting gene trees is a central problem in systematic biology. Moreover, it becomes particularly problematic when taxon coverage is patchy, so that not all…

Whereas for strings, higher-order empirical entropy is the standard entropy measure, several different notions of empirical entropy for trees have been proposed in the past, notably label entropy, degree entropy, conditional versions of the…

A fringe subtree of a rooted tree is a subtree consisting of one of the nodes and all its descendants. In this paper, we are specifically interested in the number of non-isomorphic trees that appear in the collection of all fringe subtrees…

Each natural number can be associated with some tree graph. Namely, a natural number $n$ can be factorized as $$ n = p_1^{\alpha_1}\ldots p_k^{\alpha_k},$$ where $p_i$ are distinct prime numbers. Since $\alpha_i$ are naturals, they can be…

We study the asymptotic distribution of integers sharing the same rooted-tree structure that encodes their complete prime factorization tower. For each tree we derive an explicit density formula depending only on a pair $(m,k)$, the density…

Binary search trees (BSTs) are fundamental data structures whose performance is largely governed by tree height. We introduce a block model for constructing BSTs by embedding internal BSTs into the nodes of an external BST -- a structure…

Measures of tree balance play an important role in different research areas such as mathematical phylogenetics or theoretical computer science. The balance of a tree is usually quantified in a single number, called a balance or imbalance…

We consider stochastic processes with (or without) memory whose evolution is encoded by a finite or infinite rooted tree. The main goal is to compare the entropy rates of a given base process and a second one, to be considered as a…

Trees or rooted trees have been generously studied in the literature. A forest is a set of trees or rooted trees. Here we give recurrence relations between the number of some kind of rooted forest with $k$ roots and that with $k+1$ roots on…

In this paper, we provide a polynomial time algorithm to calculate the probability of a {\it ranked} gene tree topology for a given species tree, where a ranked tree topology is a tree topology with the internal vertices being ordered. The…

In the paper are computed: the number of binary trees with n nodes and k leaves; the number of leaves in the set of all binary trees with n nodes. These are used to compute the number of states in the buddy system.

For random matrices with tree-like structure there exists a recursive relation for the local Green functions whose solution permits to find directly many important quantities in the limit of infinite matrix dimensions. The purpose of this…

A fringe subtree of a rooted tree is a subtree induced by one of the vertices and all its descendants. We consider the problem of estimating the number of distinct fringe subtrees in two types of random trees: simply generated trees and…

We consider a recursively defined random set of points and its barycenter, where the random set is constructed by the following inductive rule: Given a realization of $n-1$ points, one of them is picked at random and serves as a source the…

Tree rotations (left and right) are basic local deformations allowing to transform between two unlabeled binary trees of the same size. Hence, there is a natural problem of practically finding such transformation path with low number of…

A subtree can be induced in a natural way by a subset of leaves of a rooted tree. We study the number of nonisomorphic such subtrees induced by leaves (leaf-induced subtrees) of a rooted tree with no vertex of outdegree 1 (topological…

Here we present a new fixed parameter tractable algorithm to compute the hybridization number r of two rooted, not necessarily binary phylogenetic trees on taxon set X in time (6^r.r!).poly(n)$, where n=|X|. The novelty of this approach is…

We consider the creation conditions of diverse hierarchical trees both analytically and numerically. A connection between the probabilities to create hierarchical levels and the probability to associate these levels into a united structure…

We consider the number of spanning trees in circulant graphs of $\beta n$ vertices with generators depending linearly on $n$. The matrix tree theorem gives a closed formula of $\beta n$ factors, while we derive a formula of $\beta-1$…