Related papers: Mutually Uncorrelated Codes for DNA Storage
In this paper we propose a simple method for generating short-length rate-compatible codes over $\mathbb{Z}_M$ that are robust to non-coherent detection for $M$-PSK constellations. First, a greedy algorithm is used to construct a family of…
Unary coding is useful but it is redundant in its standard form. Unary coding can also be seen as spatial coding where the value of the number is determined by its place in an array. Motivated by biological finding that several neurons in…
The notion of universally decodable matrices (UDMs) was recently introduced by Tavildar and Viswanath while studying slow fading channels. It turns out that the problem of constructing UDMs is tightly connected to the problem of…
The Universal Coding of Integers~(UCI) is suitable for discrete memoryless sources with unknown probability distributions and infinitely countable alphabet sizes. A UCI is a class of prefix codes for which the ratio of the average codeword…
We study the inherent space requirements of shared storage algorithms in asynchronous fault-prone systems. Previous works use codes to achieve a better storage cost than the well-known replication approach. However, a closer look reveals…
This paper presents and analyzes a novel concatenated coding scheme for enabling error resilience in two distributed storage settings: one being storage using existing regenerating codes and the second being storage using locally repairable…
We consider irregular product codes.In this class of codes, each codeword is represented by a matrix. The entries in each row (column) of the matrix should come from a component row (column) code. As opposed to (standard) product codes, we…
Constant dimension codes are used for error control in random linear network coding, so that constructions for these codes with large cardinality have achieved wide attention in the last decade. Here, we improve the so-called linkage…
We study the problem of strong coordination of the actions of two nodes $X$ and $Y$ that communicate over a discrete memoryless channel (DMC) such that the actions follow a prescribed joint probability distribution. We propose two novel…
We consider DNA codes based on the nearest-neighbor (stem) similarity model which adequately reflects the "hybridization potential" of two DNA sequences. Our aim is to present a survey of bounds on the rate of DNA codes with respect to a…
In this paper, we study error-correcting codes for the storage of data in synthetic deoxyribonucleic acid (DNA). We investigate a storage model where data is represented by an unordered set of $M$ sequences, each of length $L$. Errors…
Decoding sequences that stem from multiple transmissions of a codeword over an insertion, deletion, and substitution channel is a critical component of efficient deoxyribonucleic acid (DNA) data storage systems. In this paper, we consider a…
We consider a network consisting of a file server connected through a shared link to a number of users, each equipped with a cache. Knowing the popularity distribution of the files, the goal is to optimally populate the caches such as to…
Constant-dimension codes (CDCs) have been investigated for noncoherent error correction in random network coding. The maximum cardinality of CDCs with given minimum distance and how to construct optimal CDCs are both open problems, although…
A superimposed code is a collection of binary vectors (codewords) with the property that no vector is contained in the Boolean sum of any $k$ others, enabling unique identification of codewords within any group of $k$. Superimposed codes…
We construct a joint coordination-channel polar coding scheme for strong coordination of actions between two agents $\mathsf X$ and $\mathsf Y$, which communicate over a discrete memoryless channel (DMC) such that the joint distribution of…
In the last decade there has been a great interest in extending results for codes equipped with the Hamming metric to analogous results for codes endowed with the rank metric. This work follows this thread of research and studies the…
High-throughput and quantitative experimental technologies are experiencing rapid advances in the biological sciences. One important recent technique is multiplexed fluorescence in situ hybridization (mFISH), which enables the…
A $q$-ary code of length $n$, size $M$, and minimum distance $d$ is called an $(n,M,d)_q$ code. An $(n,q^{k},n-k+1)_q$ code is called a maximum distance separable (MDS) code. In this work, some MDS codes over small alphabets are classified.…
For a Distributed Storage System (DSS), the \textit{Fractional Repetition} (FR) code is a class in which replicas of encoded data packets are stored on distributed chunk servers, where the encoding is done using the Maximum Distance…