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In a noisy environment, oscillations loose their coherence which can be characterized by a quality factor. We determine this quality factor for oscillations arising from a driven Fokker-Planck dynamics along a periodic one-dimensional…

Statistical Mechanics · Physics 2023-12-15 Benedikt Remlein , Volker Weissmann , Udo Seifert

A general master equation is derived to describe an electromechanical single-dot transistor in the Coulomb blockade regime. In the equation, Fermi distribution functions in the two leads are taken into account, which allows one to study the…

Mesoscale and Nanoscale Physics · Physics 2015-06-03 Wenxi Lai , Yunshan Cao , Zhongshui Ma

Singularities in macroscopic systems at discontinuous phase transitions are replaced in finite systems by sharp but continuous changes. Both the energy differences between metastable and stable phases and the energy barriers separating…

Statistical Mechanics · Physics 2009-11-13 Alexander Patashinski , Mark Ratner

Dynamical phase transitions can occur in isolated quantum systems that are brought out of equilibrium by sudden parameter changes. We discuss the characterization of such dynamical phase transitions based on the statistics of produced…

Statistical Mechanics · Physics 2015-06-03 Pietro Smacchia , Michael Knap , Eugene Demler , Alessandro Silva

Different types of synchronization states are found when non-linear chemical oscillators are embedded into an active medium that interconnects the oscillators but also contributes to the system dynamics. Using different theoretical tools,…

Adaptation and Self-Organizing Systems · Physics 2021-03-09 David García-Selfa , Gourab Ghoshal , Christian Bick , Juan Pérez-Mercader , Alberto P. Muñuzuri

Equilibrium and nonequilibrium systems exhibit power-law singularities close to their critical and bifurcation points respectively. A recent study has shown that biochemical nonequilibrium models with positive feedback belong to the…

Quantitative Methods · Quantitative Biology 2019-06-12 Indrani Bose , Sayantari Ghosh

Enzyme-mediated reactions may proceed through multiple intermediate conformational states before creating a final product molecule, and one often wishes to identify such intermediate structures from observations of the product creation. In…

Quantitative Methods · Quantitative Biology 2013-11-19 Wiet H. de Ronde , Bryan C. Daniels , Andrew Mugler , Nikolai A. Sinitsyn , Ilya Nemenman

All known up to now models of chemical oscillations are based exclusively on kinetic considerations. The chemical gross-process equation is split usually by elementary steps, each step is supplied by an arrow and a differential equation,…

Chemical Physics · Physics 2010-08-09 B. Zilbergleyt

Over the last half century the liquid-gas phase transition and the magnetization phase transition have come to be well understood. After an order parameter, $r$, is defined, it can be derived how $r=0$ for $T>T_c$ and how $r \propto (T_c -…

Statistical Mechanics · Physics 2020-03-17 Steven Yuvan , Martin Bier

The impact of random fluctuations on the dynamical behavior a complex biological systems is a longstanding issue, whose understanding would shed light on the evolutionary pressure that nature imposes on the intrinsic noise levels and would…

Molecular Networks · Quantitative Biology 2018-01-26 Fabrizio Pucci , Marianne Rooman

A biochemical oscillator model, describing developmental stage of myxobacteria, is analyzed mathematically. Observations from numerical simulations show that in a certain range of parameters, the corresponding system of ordinary…

Dynamical Systems · Mathematics 2019-12-04 Hadi Taghvafard , Hildeberto Jardon-Kojakhmetov , Peter Szmolyan , Ming Cao

Biomolecular processes are typically modeled using chemical reaction networks coupled to infinitely large chemical reservoirs. A difference in chemical potential between these reservoirs can drive the system into a non-equilibrium steady…

Statistical Mechanics · Physics 2020-06-17 Jonas H. Fritz , Basile Nguyen , Udo Seifert

We consider the measurement of the third cumulant of current fluctuations arising from a point contact, employing the transitions that they cause in a quantum detector connected to the contact. We detail two generic detectors: a quantum…

Mesoscale and Nanoscale Physics · Physics 2007-05-23 Tero T. Heikkila , Teemu Ojanen

Phase transitions are fundamental in nature. A small parameter change near a critical point leads to a qualitative change in system properties. Across a regular phase transition, the system remains in thermal equilibrium and, therefore,…

Strongly Correlated Electrons · Physics 2024-12-24 Jingwen Li , Michael Turaev , Masakazu Matsubara , Kristin Kliemt , Cornelius Krellner , Shovon Pal , Manfred Fiebig , Johann Kroha

Why are different mass states coherent? What is the correct formula for the oscillation phase? How can textbook formulas for oscillations in time describe experiments which never measure time? How can we treat the different velocities and…

High Energy Physics - Phenomenology · Physics 2014-11-18 Harry J. Lipkin

We review the theoretical behaviour of the total and one-particle structure factors at a quantum phase transition for temperature T=0. The predictions are compared with exact or numerical results for the transverse Ising model, the…

Statistical Mechanics · Physics 2009-11-13 C. J. Hamer

Synchronization transition in oscillatory networks manifests itself as the appearance of a periodic global mode. While perfect in the thermodynamic limit, this mode fluctuates for finite ensembles. We characterize the coherence of this mode…

Chaotic Dynamics · Physics 2026-01-12 A. Pikovsky , F. Bagnoli , S. Iubini

Quantum criticality of open many-body systems has attracted lots of interest for emergent phenomena and universality. Here we present the exact steady state of the quantum van der Pol oscillator using the complex $P$-representation. We show…

Quantum Physics · Physics 2025-09-03 Yaohua Li , Xuanchen Zhang , Yong-Chun Liu

We study the thermodynamic properties of an ideal gas of fermions in a harmonic oscillator confining potential. The analogy between this problem and the de Haas-van Alphen effect is discussed and used to obtain analytical results for the…

Statistical Mechanics · Physics 2015-06-25 David J. Toms

We consider the motion of a harmonically trapped overdamped particle, which is submitted to a self-phoretic force, that is proportional to the gradient of a diffusive field for which the particle itself is the source. In agreement with…

Statistical Mechanics · Physics 2025-01-23 A. Alexandre , L. Anderson , T. Collin-Dufresne , T. Guérin , D. S. Dean