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Dynamics in biological networks are in general robust against several perturbations. We investigate a coupled map network as a model motivated by gene regulatory networks and design systems which are robust against phenotypic perturbations…

Molecular Networks · Quantitative Biology 2015-03-20 Nen Saito , Macoto Kikuchi

The topology of many real complex networks has been conjectured to be embedded in hidden metric spaces, where distances between nodes encode their likelihood of being connected. Besides of providing a natural geometrical interpretation of…

Physics and Society · Physics 2017-01-23 Antoine Allard , M. Ángeles Serrano , Guillermo García-Pérez , Marián Boguñá

A neural network with fixed topology can be regarded as a parametrization of functions, which decides on the correlations between functional variations when parameters are adapted. We propose an analysis, based on a differential geometry…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Marc Toussaint

Although neural networks are capable of reaching astonishing performances on a wide variety of contexts, properly training networks on complicated tasks requires expertise and can be expensive from a computational perspective. In industrial…

Machine Learning · Statistics 2021-05-11 Théo Lacombe , Yuichi Ike , Mathieu Carriere , Frédéric Chazal , Marc Glisse , Yuhei Umeda

Network controllability measures how well a networked system can be controlled to a target state, and its robustness reflects how well the system can maintain the controllability against malicious attacks by means of node-removals or…

Systems and Control · Electrical Eng. & Systems 2022-06-02 Yang Lou , Yaodong He , Lin Wang , Guanrong Chen

It has been proposed that adaptation in complex systems is optimized at the critical boundary between ordered and disordered dynamical regimes. Here, we review models of evolving dynamical networks that lead to self-organization of network…

Adaptation and Self-Organizing Systems · Physics 2008-11-07 Thimo Rohlf , Stefan Bornholdt

Network systems consist of subsystems and their interconnections, and provide a powerful framework for analysis, modeling and control of complex systems. However, subsystems may have high-dimensional dynamics, and the amount and nature of…

Optimization and Control · Mathematics 2020-12-07 Xiaodong Cheng , Jacquelien M. A. Scherpen

In this paper we study the controllability of networked systems with static network topologies using tools from algebraic graph theory. Each agent in the network acts in a decentralized fashion by updating its state in accordance with a…

Systems and Control · Computer Science 2013-02-12 Ahmet Yasin Yazicioglu , Waseem Abbas , Magnus Egerstedt

Oscillation has an important role in bio-dynamical systems such as circadian rhythms and eukaryotic cell cycle. John Tyson et. al. in Nature Review Mol Cell Biol 2008 examined a limited number of network topologies consisting of three nodes…

Molecular Networks · Quantitative Biology 2011-10-14 Matthew Bailey , Jaewook Joo

A key issue in complex systems regards the relationship between topology and dynamics. In this work, we use a recently introduced network property known as steering coefficient as a means to approach this issue with respect to different…

Physics and Society · Physics 2017-11-27 Paulo J. P. de Souza , Cesar H. Comin , Luciano da F. Costa

Conformational transitions are ubiquitous in biomolecular systems, have significant functional roles and are subject to evolutionary pressures. Here we provide a first theoretical framework for topological transition, i.e. conformational…

Disordered Systems and Neural Networks · Physics 2015-09-02 Alireza Mashaghi , Abolfazl Ramezanpour

Topology and weights are closely related in weighted complex networks and this is reflected in their modular structure. We present a simple network model where the weights are generated dynamically and they shape the developing topology. By…

Physics and Society · Physics 2008-01-30 J. M. Kumpula , J. -P. Onnela , J. Saramaki , K. Kaski , J. Kertesz

To better understand the correlation between network topological features and the robustness of network controllability in a general setting, this paper suggests a practical approach to searching for optimal network topologies with given…

Systems and Control · Electrical Eng. & Systems 2020-09-02 Yang Lou , Lin Wang , Kim Fung Tsang , Guanrong Chen

We study the problem of controlling a general complex network towards an assigned synchronous evolution, by means of a pinning control strategy. We define the pinning-controllability of the network in terms of the spectral properties of an…

Disordered Systems and Neural Networks · Physics 2007-05-23 Francesco Sorrentino , Mario di Bernardo , Franco Garofalo , Guanrong Chen

In a recent paper, it has been suggested that the controllability of a diffusively coupled complex network, subject to localized feedback loops at some of its vertices, can be assessed by means of a Master Stability Function approach, where…

Disordered Systems and Neural Networks · Physics 2007-08-09 Francesco Sorrentino

The architecture of mechanical metamaterialsis designed to harness geometry, non-linearity and topology to obtain advanced functionalities such as shape morphing, programmability and one-way propagation. While a purely geometric framework…

Soft Condensed Matter · Physics 2018-02-14 Corentin Coulais , Chris Kettenis , Martin van Hecke

Identifying and explaining the structure of complex networks at different scales has become an important problem across disciplines. At the mesoscale, modular architecture has attracted most of the attention. At the macroscale, other…

Physics and Society · Physics 2018-11-09 María J. Palazzi , Javier Borge-Holthoefer , Claudio Tessone , Albert Solé-Ribalta

Controllability and observability have long been recognized as fundamental structural properties of dynamical systems, but have recently seen renewed interest in the context of large, complex networks of dynamical systems. A basic problem…

Optimization and Control · Mathematics 2016-11-18 Tyler H. Summers , Fabrizio L. Cortesi , John Lygeros

The Renormalization Group is crucial for understanding systems across scales, including complex networks. Renormalizing networks via network geometry, a framework in which their topology is based on the location of nodes in a hidden metric…

Physics and Society · Physics 2024-07-22 Jasper van der Kolk , Marián Boguñá , M. Ángeles Serrano

Controlling complex networked systems to a desired state is a key research goal in contemporary science. Despite recent advances in studying the impact of network topology on controllability, a comprehensive understanding of the synergistic…

Optimization and Control · Mathematics 2014-08-04 Chen Zhao , Wen-Xu Wang , Yang-Yu Liu , Jean-Jacques Slotine