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The network structure (or topology) of a dynamical network is often unavailable or uncertain. Hence, we consider the problem of network reconstruction. Network reconstruction aims at inferring the topology of a dynamical network using…

Optimization and Control · Mathematics 2018-09-26 Henk J. van Waarde , Pietro Tesi , M. Kanat Camlibel

Complex network topologies and hyperbolic geometry seem specularly connected, and one of the most fascinating and challenging problems of recent complex network theory is to map a given network to its hyperbolic space. The Popularity…

Disordered Systems and Neural Networks · Physics 2017-12-08 Josephine Maria Thomas , Alessandro Muscoloni , Sara Ciucci , Ginestra Bianconi , Carlo Vittorio Cannistraci

Across all scales of the physical world, dynamical systems can often be usefully represented as abstract networks that encode the system's units and inter-unit interactions. Understanding how physical rules shape the topological structure…

Mesoscale and Nanoscale Physics · Physics 2023-11-28 Abigail N. Poteshman , Mathieu Ouellet , Lee C. Bassett , Danielle S. Bassett

Topology optimization is computationally demanding that requires the assembly and solution to a finite element problem for each material distribution hypothesis. As a complementary alternative to the traditional physics-based topology…

Machine Learning · Computer Science 2018-08-23 Saurabh Banga , Harsh Gehani , Sanket Bhilare , Sagar Patel , Levent Kara

We consider a network of identical, first-order linear systems, and investigate how replacing a subset of the systems composing the network with higher-order ones, either taken to be generic or specifically designed, may affect its…

Optimization and Control · Mathematics 2025-04-25 Marco Peruzzo , Giacomo Baggio , Francesco Ticozzi

Biochemical networks are used in computational biology, to model the static and dynamical details of systems involved in cell signaling, metabolism, and regulation of gene expression. Parametric and structural uncertainty, as well as…

Molecular Networks · Quantitative Biology 2014-10-15 Ovidiu Radulescu , Alexander N. Gorban , Andrei Zinovyev , Vincent Noel

A cell's behavior is a consequence of the complex interactions between its numerous constituents, such as DNA, RNA, proteins and small molecules. Cells use signaling pathways and regulatory mechanisms to coordinate multiple processes,…

Molecular Networks · Quantitative Biology 2007-09-12 Reka Albert

The controllability of a network is a theoretical problem of relevance in a variety of contexts ranging from financial markets to the brain. Until now, network controllability has been characterized only on isolated networks, while the vast…

Physics and Society · Physics 2016-02-17 Giulia Menichetti , Luca Dall'Asta , Ginestra Bianconi

An important problem in network analysis is predicting a node attribute using both network covariates, such as graph embedding coordinates or local subgraph counts, and conventional node covariates, such as demographic characteristics.…

Methodology · Statistics 2023-02-24 Robert Lunde , Elizaveta Levina , Ji Zhu

Flexible mechanical structures can undergo large deformations under small loads, enabling large, complex, and nonlinear wave responses under finite-frequency driving. Here, we study a dynamically driven canonical flexible mechanical…

Soft Condensed Matter · Physics 2026-04-21 Neel Singh , Audrey A. Watkins , Giovanni Bordiga , Vincent Tournat , Katia Bertoldi , Zeb Rocklin

Networks of elastic fibers are ubiquitous in biological systems and often provide mechanical stability to cells and tissues. Fiber reinforced materials are also common in technology. An important characteristic of such materials is their…

From the perspective of network analysis, the ubiquitous networks are comprised of regular and irregular components, which makes uncovering the complexity of network structures to be a fundamental challenge. Exploring the regular…

Social and Information Networks · Computer Science 2018-08-30 Tao Wu , Shaojie Qiao , Xingping Xian , Xi-Zhao Wang , Wei Wang , Yanbing Liu

The controllability of networks comprising homogeneous multi-input multi-output linear subsystems with linear couplings among them is examined, from a modal perspective. The eigenvalues of the network model are classified into two groups:…

Systems and Control · Computer Science 2018-05-08 Mengran Xue , Sandip Roy

Natural organisms utilize distributed actuation through their musculoskeletal systems to adapt their gait for traversing diverse terrains or to morph their bodies for varied tasks. A longstanding challenge in robotics is to emulate this…

Robotic performance emerges from the coupling of body and controller, yet it remains unclear when morphology-control co-design is necessary. We present a unified framework that embeds morphology and control parameters within a single neural…

Neural and Evolutionary Computing · Computer Science 2025-10-10 Yi Zhang , Yue Xie , Tao Sun , Fumiya Iida

Directed networks are essential for representing complex systems, capturing the asymmetry of interactions in fields such as neuroscience, transportation, and social networks. Directionality reveals how influence, information, or resources…

Disordered Systems and Neural Networks · Physics 2024-12-23 Marián Boguñá , M. Ángeles Serrano

Inspired by studies on the airports' network and the physical Internet, we propose a general model of weighted networks via an optimization principle. The topology of the optimal network turns out to be a spanning tree that minimizes a…

Physics and Society · Physics 2009-11-11 Marc Barthelemy , Alessandro Flammini

The superior performance of Deformable Convolutional Networks arises from its ability to adapt to the geometric variations of objects. Through an examination of its adaptive behavior, we observe that while the spatial support for its neural…

Computer Vision and Pattern Recognition · Computer Science 2018-11-29 Xizhou Zhu , Han Hu , Stephen Lin , Jifeng Dai

The structure and dynamics of a typical biological system are complex due to strong and inhomogeneous interactions between its constituents. The investigation of such systems with classical mathematical tools, such as differential equations…

Molecular Networks · Quantitative Biology 2008-02-15 Murat Tuğrul

Diffusion-driven instability is a fundamental mechanism underlying pattern formation in spatially extended systems. In almost all existing works, diffusion across the links of the underlying network is modeled through scalar weights,…

Statistical Mechanics · Physics 2026-02-16 Anna Gallo , Wilfried Segnou , Timoteo Carletti
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