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Computational physics increasingly depends on large simulation datasets generated by software that remains under active development for many years. In such settings, reproducibility requires not only well documented data but also explicit…

Computational Physics · Physics 2026-04-30 Markus Uehlein , Tobias Held , Christopher Seibel , Lukas G. Jonda , Baerbel Rethfeld , Sebastian T. Weber

In the field of computational science and engineering, workflows often entail the application of various software, for instance, for simulation or pre- and postprocessing. Typically, these components have to be combined in arbitrarily…

Software Engineering · Computer Science 2022-11-15 Philipp Diercks , Dennis Gläser , Ontje Lünsdorf , Michael Selzer , Bernd Flemisch , Jörg F. Unger

Machine learning (ML) is an increasingly important scientific tool supporting decision making and knowledge generation in numerous fields. With this, it also becomes more and more important that the results of ML experiments are…

Machine Learning · Computer Science 2020-06-23 Sheeba Samuel , Frank Löffler , Birgitta König-Ries

Provenance templates are now a recognised methodology for the construction of data provenance records. Each template defines the provenance of a domain-specific action in abstract form, which may then be instantiated as required by a single…

Cryptography and Security · Computer Science 2020-06-22 Elliot Fairweather , Rudolf Wittner , Martin Chapman , Petr Holub , Vasa Curcin

In long-lasting scientific workflow executions in HPC machines, computational scientists (the users in this work) often need to fine-tune several workflow parameters. These tunings are done through user steering actions that may…

Databases · Computer Science 2019-05-20 Renan Souza , Vítor Silva , José Camata , Alvaro Coutinho , Patrick Valduriez , Marta Mattoso

Data provenance is a valuable tool for detecting and preventing cyber attack, providing insight into the nature of suspicious events. For example, an administrator can use provenance to identify the perpetrator of a data leak, track an…

Cryptography and Security · Computer Science 2016-09-02 Adam Bates , Kevin Butler , Alin Dobra , Brad Reaves , Patrick Cable , Thomas Moyer , Nabil Schear

The drive for reproducibility in the computational sciences has provoked discussion and effort across a broad range of perspectives: technological, legislative/policy, education, and publishing. Discussion on these topics is not new, but…

Quantitative Methods · Quantitative Biology 2018-10-10 Daniel G. Hurley , Joseph Cursons , Matthew Faria , David M. Budden , Vijay Rajagopal , Edmund J. Crampin

Scientific data governance should prioritize maximizing the utility of data throughout the research lifecycle. Research software systems that enable analysis reproducibility inform data governance policies and assist administrators in…

Data provenance collects comprehensive information about the events and operations in a computer system at both application and system levels. It provides a detailed and accurate history of transactions that help delineate the data flow…

Cryptography and Security · Computer Science 2021-07-06 Md Morshed Alam , Weichao Wang

Sharing provenance across workflow management systems automatically is not currently possible, but the value of such a capability is high since it could greatly reduce the amount of duplicated workflows, accelerate the discovery of new…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-04-17 Jay Jay Billings

In recent years, the research community has raised serious questions about the reproducibility of scientific work. In particular, since many studies include some kind of computing work, reproducibility is also a technological challenge, not…

Software Engineering · Computer Science 2023-08-03 Lázaro Costa , Susana Barbosa , Jácome Cunha

Reproducibility of computationally-derived scientific discoveries should be a certainty. As the product of several person-years' worth of effort, results -- whether disseminated through academic journals, conferences or exploited through…

Computational Engineering, Finance, and Science · Computer Science 2015-06-17 Tom Crick , Benjamin A. Hall , Samin Ishtiaq

Data volumes and rates of research infrastructures will continue to increase in the upcoming years and impact how we interact with their final data products. Little of the processed data can be directly investigated and most of it will be…

Instrumentation and Methods for Astrophysics · Physics 2024-04-23 Michael A. C. Johnson , Hans-Rainer Klöckner , Albina Muzafarova , Kristen Lackeos , David J. Champion , Marta Dembska , Sirko Schindler , Marcus Paradies

Provenance for database queries or scientific workflows is often motivated as providing explanation, increasing understanding of the underlying data sources and processes used to compute the query, and reproducibility, the capability to…

Programming Languages · Computer Science 2014-08-13 James Cheney , Amal Ahmed , Umut A. Acar

In an organization specifically as virtual as cloud there is need for access control systems to constrain users direct or backhanded action that could lead to breach of security. In cloud, apart from owner access to confidential data the…

Cryptography and Security · Computer Science 2014-11-10 Muralikrishnan Ramane , Balaji Vasudevan , Sathappan Allaphan

Scientists today collect, analyze, and generate TeraBytes and PetaBytes of data. These data are often shared and further processed and analyzed among collaborators. In order to facilitate sharing and data interpretations, data need to carry…

Instrumentation and Methods for Astrophysics · Physics 2010-05-18 Ewa Deelman , Bruce Berriman , Ann Chervenak , Oscar Corcho , Paul Groth , Luc Moreau

Workflow provenance typically assumes that each module is a "black-box", so that each output depends on all inputs (coarse-grained dependencies). Furthermore, it does not model the internal state of a module, which can change between…

Databases · Computer Science 2012-01-04 Yael Amsterdamer , Susan B. Davidson , Daniel Deutch , Tova Milo , Julia Stoyanovich , Val Tannen

Providing provenance in scientific workflows is essential for reproducibility and auditability purposes. Workflow systems model and record provenance describing the steps performed to obtain the final results of a computation. In this work,…

Determining and verifying product provenance remains a critical challenge in global supply chains, particularly as geopolitical conflicts and shifting borders create new incentives for misrepresentation of commodities, such as hiding the…

The ubiquity of computation in modern scientific research inflicts new challenges for reproducibility. While most journals now require code and data be made available, the standards for organization, annotation, and validation remain lax,…

Other Quantitative Biology · Quantitative Biology 2022-10-07 Griffin Chure