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With the increasing amount of data and use of computation in science, software has become an important component in many different domains. Computing is now being used more often and in more aspects of scientific work including data…

Software Engineering · Computer Science 2013-12-17 David Koop , Juliana Freire , Claudio T. Silva

Successful data-driven science requires complex data engineering pipelines to clean, transform, and alter data in preparation for machine learning, and robust results can only be achieved when each step in the pipeline can be justified, and…

Databases · Computer Science 2024-04-08 Adriane Chapman , Luca Lauro , Paolo Missier , Riccardo Torlone

We propose an approach for improved reproducibility that includes capturing and relating provenance characteristics and performance metrics, in a hybrid queriable system, the ProvEn server. The system capabilities are illustrated on two use…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-05-04 Line Pouchard , Sterling Baldwin , Todd Elsethagen , Carlos Gamboa , Shantenu Jha , Bibi Raju , Eric Stephan , Li Tang , Kerstin Kleese Van Dam

Data provenance, or data lineage, describes the life cycle of data. In scientific workflows on HPC systems, scientists often seek diverse provenance (e.g., origins of data products, usage patterns of datasets). Unfortunately, existing…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-08-03 Runzhou Han , Mai Zheng , Suren Byna , Houjun Tang , Bin Dong , Dong Dai , Yong Chen , Dongkyun Kim , Joseph Hassoun , David Thorsley , Matthew Wolf

The Virtual Research Environment is an analysis platform developed at CERN serving the needs of scientific communities involved in European Projects. Its scope is to facilitate the development of end-to-end physics workflows, providing…

Data provenance (the process of determining the origin and derivation of data outputs) has applications across multiple domains including explaining database query results and auditing scientific workflows. Despite decades of research,…

Databases · Computer Science 2026-05-15 Chrysanthi Kosyfaki , Ruiyuan Zhang , Nikos Mamoulis , Xiaofang Zhou

Capturing the history of operations and activities during a computational workflow is significantly important for Earth Observation (EO). The data provenance helps to collect the metadata that records the lineage of data products, providing…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-06-11 H. Omidi , L. Sacco , V. Hutter , G. Irsiegler , M. Claus , M. Schobben , A. Jacob , M. Schramm , S. Fiore

Study reproducibility is essential to corroborate, build on, and learn from the results of scientific research but is notoriously challenging in bioinformatics, which often involves large data sets and complex analytic workflows involving…

Quantitative Methods · Quantitative Biology 2023-05-22 Christopher R. Keefe , Matthew R. Dillon , Chloe Herman , Mary Jewell , Colin V. Wood , Evan Bolyen , J. Gregory Caporaso

Machine Learning (ML) has already fundamentally changed several businesses. More recently, it has also been profoundly impacting the computational science and engineering domains, like geoscience, climate science, and health science. In…

As the demand for large scale AI models continues to grow, the optimization of their training to balance computational efficiency, execution time, accuracy and energy consumption represents a critical multidimensional challenge. Achieving…

Machine Learning · Computer Science 2025-07-03 Gabriele Padovani , Valentine Anantharaj , Sandro Fiore

Even though computational reproducibility is widely accepted as necessary for research validation and reuse, it is often not considered during the research process. This is because reproducibility tools are typically stand-alone and require…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-03-04 Ana Trisovic , Chris R. Jones , Ben Couturier , Marco Clemencic

This paper presents the use of the CRISTAL software in the N4U project. CRISTAL was used to create a set of provenance aware analysis tools for the Neuroscience domain. This paper advocates that the approach taken in N4U to build the…

Databases · Computer Science 2016-01-20 Jetendr Shamdasani , Richard McClatchey , Andrew Branson , Zsolt Kovacs

Scientists rely on simulations to study natural phenomena. Trusting the simulation results is vital to develop sciences in any field. One approach to build trust is to ensure the reproducibility and traceability of the simulations through…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-09-21 Paula Olaya , Jay Lofstead , Michela Taufer

To benefit from the abundance of data and the insights it brings data processing pipelines are being used in many areas of research and development in both industry and academia. One approach to automating data processing pipelines is the…

Cryptography and Security · Computer Science 2023-10-18 Ludwig Stage , Dimka Karastoyanova

Many existing scientific workflows require High Performance Computing environments to produce results in a timely manner. These workflows have several software library components and use different environments, making the deployment and…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-03-26 Liliane Kunstmann , Débora Pina , Daniel de Oliveira , Marta Mattoso

Scientific processes rely on software as an important tool for data acquisition, analysis, and discovery. Over the years sustainable software development practices have made progress in being considered as an integral component of research.…

Software Engineering · Computer Science 2023-12-21 Akash Dhruv , Anshu Dubey

As data-driven methods are becoming pervasive in a wide variety of disciplines, there is an urgent need to develop scalable and sustainable tools to simplify the process of data science, to make it easier to keep track of the analyses being…

Databases · Computer Science 2016-10-18 Hui Miao , Amit Chavan , Amol Deshpande

Ensuring the trustworthiness and long-term verifiability of scientific data is a foundational challenge in the era of data-intensive, collaborative research. Provenance metadata plays a key role in this context, capturing the origin,…

Networking and Internet Architecture · Computer Science 2025-06-02 Nicola Giuseppe Marchioro , Yannis Velegrakis , Valentine Anantharaj , Ian Foster , Sandro Luigi Fiore

Analytic software tools and workflows are increasing in capability, complexity, number, and scale, and the integrity of our workflows is as important as ever. Specifically, we must be able to inspect the process of analytic workflows to…

Artificial Intelligence · Computer Science 2020-11-10 Scott Friedman , Jeff Rye , David LaVergne , Dan Thomsen , Matthew Allen , Kyle Tunis

This paper explores the integration of provenance tracking systems within the context of Semantic Web technologies to enhance data integrity in diverse operational environments. SURROUND Australia Pty Ltd demonstrates innovative…

Cryptography and Security · Computer Science 2025-01-17 Nilesh Jain