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We use a natural ordered extension of the Chinese Restaurant Process to grow a two-parameter family of binary self-similar continuum fragmentation trees. We provide an explicit embedding of Ford's sequence of alpha model trees in the…
We introduce an extension of the P\'olya tree approach for constructing distributions on the space of probability measures. By using optional stopping and optional choice of splitting variables, the construction gives rise to random…
We introduce two models for multi-type random trees motivated by studies of trait dependence in the evolution of species. Our discrete time model, the multi-type ERM tree, is a generalization of Markov propagation models on a random tree…
We consider critical multitype Bienaym\'e trees that are either irreducible or possess a critical irreducible component with attached subcritical components. These trees are studied under two distinct conditioning frameworks: first,…
Supertree construction is the process by which a set of phylogenetic trees, each on a subset of the overall set X of species, is combined into a tree on the full set S. The traditional use of supertree methods is the assembly of a large…
Species tree estimation is a complex problem, due to the fact that different parts of the genome can have different evolutionary histories than the genome itself. One of the causes for this discord is incomplete lineage sorting (also called…
In the critical beta-splitting model of a random $n$-leaf rooted tree, clades are recursively (from the root) split into sub-clades, and a clade of $m$ leaves is split into sub-clades containing $i$ and $m-i$ leaves with probabilities…
In the critical beta-splitting model of a random $n$-leaf rooted tree, clades are recursively split into sub-clades, and a clade of $m$ leaves is split into sub-clades containing $i$ and $m-i$ leaves with probabilities $\propto 1/(i(m-i))$.…
Comparative analyses of phylogenetic trees typically require identical taxon sets, however, in practice, trees often include distinct but overlapping taxa. Pruning non-shared leaves discards phylogenetic signal, whereas tree completion can…
We study self-similarity in random binary rooted trees. In a well-understood case of Galton-Watson trees, a distribution on a space of trees is said to be self-similar if it is invariant with respect to the operation of pruning, which cuts…
We study the pruning process developed by Abraham and Delmas (2012) on the discrete Galton-Watson sub-trees of the L\'{e}vy tree which are obtained by considering the minimal sub-tree connecting the root and leaves chosen uniformly at rate…
We consider fragmentations of an R-tree $T$ driven by cuts arriving according to a Poisson process on $T \times [0, \infty)$, where the first co-ordinate specifies the location of the cut and the second the time at which it occurs. The…
For each integer $k \geq 2$, we introduce a sequence of $k$-ary discrete trees constructed recursively by choosing at each step an edge uniformly among the present edges and grafting on "its middle" $k-1$ new edges. When $k=2$, this…
In a random complete and separable metric space that we call the lookdown space, we encode the genealogical distances between all individuals ever alive in a lookdown model with simultaneous multiple reproduction events. We construct…
We consider a random forest $\mathcal{F}^*$, defined as a sequence of i.i.d. birth-death (BD) trees, each started at time 0 from a single ancestor, stopped at the first tree having survived up to a fixed time $T$. We denote by…
We investigate the number of permutations that occur in random labellings of trees. This is a generalisation of the number of subpermutations occurring in a random permutation. It also generalises some recent results on the number of…
Phylogenetic trees are leaf-labelled trees used to model the evolution of species. In practice it is not uncommon to obtain two topologically distinct trees for the same set of species, and this motivates the use of distance measures to…
We consider the probability that a spanning tree chosen uniformly at random from a graph can be partitioned into a fixed number $k$ of trees of equal size by removing $k-1$ edges. In that case, the spanning tree is called {\em splittable}.…
Can we obtain a Brownian CRT of mass $1/2$ from a CRT of mass $1$ by cutting certain branches? In this paper, we will answer that question in the much more general setting of self-similar Markov trees. Self-similar Markov trees (ssMt) are…
We develop some theory of spinal decompositions of discrete and continuous fragmentation trees. Specifically, we consider a coarse and a fine spinal integer partition derived from spinal tree decompositions. We prove that for a…