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In this work, we present a quantum transport model for the selectivity filter in the KcsA potassium ion channel. This model is fully consistent with the fact that two conduction pathways are involved in the translocation of ions thorough…

Biological Physics · Physics 2015-06-18 A. A. Cifuentes , F. L. Semião

The mechanism behind the high throughput rate in K$^{+}$ channels is still an open problem. Recent simulations have shown that the passage of potassium through the K$^{+}$ channel core, the so-called selectivity filter (SF), is water-free…

Quantum Physics · Physics 2021-12-15 N. De March , S. D. Prado , L. G. Brunnet

The conduction and selectivity of calcium/sodium ion channels are described in terms of ionic Coulomb blockade, a phenomenon based on charge discreteness and an electrostatic model of an ion channel. This novel approach provides a unified…

Biological Physics · Physics 2014-05-07 I. Kh. Kaufman , P. V. E. McClintock , R. S. Eisenberg

Recently, it has been suggested that ion channel selectivity filter may exhibit quantum coherence, which may be appropriate to explain ion selection and conduction processes. Potassium channels play a vital role in many physiological…

Quantum Physics · Physics 2022-05-31 Mina Seifi , Ali Soltanmanesh , Afshin Shafiee

Potassium (K$^+$) channels regulate the flux of K$^+$ ions through cell membranes and plays significant roles in many physiological functions. This work studies the KcsA potassium channel, including the selectivity and current-voltage (IV)…

Biological Physics · Physics 2019-08-14 Zilong Song , Xiulei Cao , Tzyy-Leng Horng , Huaxiong Huang

Despite a large body of work, the exact molecular details underlying ion-selectivity and transport in the potassium channel have not been fully laid to rest. One major reason has been the lack of experimental methods that can probe these…

Chemical Physics · Physics 2015-05-30 Ziad Ganim , Andrei Tokmakoff , Alipasha Vaziri

The mechanism of selectivity in ion channels is still an open question in biology. According to recent proposals, it seems that the selectivity filter of the ion channel, which plays a key role in the channel's function, may show quantum…

Quantum Physics · Physics 2023-11-20 Mina Seifi , Ali Soltanmanesh , Afshin Shafiee

We introduce a self-consistent multi-species kinetic theory based on the structure of the narrow voltage-gated potassium channel. Transition rates depend on a complete energy spectrum with contributions including the dehydration amongst…

Biological Physics · Physics 2017-04-12 W. A. T. Gibby , D. G. Luchinsky , I. Kh. Kaufman A. Ward , P. V. E. McClintock

Classical molecular dynamics and electro-diffusion theories have achieved profound success in elucidating ion selectivity and gating mechanisms. However, reconciling strict selectivity with high flux permeation in Angstrom-scaled biological…

Optics · Physics 2026-03-10 Bin Zhou , Yangmei Li , Ziyi Zhang , Yindong Huang , Zuoxian Xiang , Chao Chang

Potassium channels play critical roles in many physiological processes, providing a selective permeation route for K+ ions in and out of a cell, by employing a carefully designed selectivity filter, evolutionarily conserved from viruses to…

Biological Physics · Physics 2021-04-16 Andrei Mironenko , Ulrich Zachariae , Bert L. de Groot , Wojciech Kopec

A linear theory of electron transport is developed for a system of two ideal quantum wires, of length L, coupled by tunneling and Coulomb interaction. The interaction of electrons with acoustical phonons is included and the results are…

Mesoscale and Nanoscale Physics · Physics 2009-10-31 O. E. Raichev , P. Vasilopoulos

Coulomb blockade phenomena and quantum fluctuations are studied in mesoscopic metallic tunnel junctions with high charging energies. If the resistance of the barriers is large compared to the quantum resistance, transport can be described…

Condensed Matter · Physics 2009-10-22 Herbert Schoeller , Gerd Schoen

We consider correlation-assisted tunnel ionization of a small molecule by an intense low-frequency laser pulse. In this mechanism, the departing electron excites the state of the ion via a Coulomb interaction. We show that the angular…

Atomic Physics · Physics 2014-04-25 Emilio Pisanty , Misha Ivanov

Understanding tunneling from an atomically sharp tip to a metallic surface requires to account for interactions on a nanoscopic scale. Inelastic tunneling of electrons generates emission of photons, whose energies intuitively should be…

Mesoscale and Nanoscale Physics · Physics 2015-06-19 F. Xu , C. Holmqvist , W. Belzig

In this paper, we study the selectivity of the potassium channel KcsA by a recently developed image-charge solvation method(ICSM) combined with molecular dynamics simulations. The hybrid solvation model in the ICSM is able to demonstrate…

Biomolecules · Quantitative Biology 2016-05-04 Katherine Baker , Duan Chen , Wei Cai

Ion channels are specific proteins present in the membranes of living cells. They control the flow of specific ions through a cell, initiated by an ion channel's electrochemical gradient. In doing so, they control important physiological…

Subcellular Processes · Quantitative Biology 2012-09-14 Andrew Das Arulsamy

Current auto- and cross-correlations are studied in a system of two capacitively coupled quantum dots. We are interested in a role of Coulomb interaction in dynamical correlations, which occur outside the Coulomb blockade region (for high…

Mesoscale and Nanoscale Physics · Physics 2015-05-13 Grzegorz Michalek , Bogdan R. Bulka

The study of selection and gating in potassium channels is a very important issue in modern biology. Indeed such structures are known in all types of cells in all organisms where they play many important functional roles. The mechanism of…

Cell Behavior · Quantitative Biology 2015-05-30 D. Andreucci , D. Bellaveglia , E. N. M. Cirillo , S. Marconi

We use a quantum trajectory-based semi-classical method to account for Coulomb interaction between the photoelectron and the parent ion in the classically forbidden, sub-barrier region during strong-field tunneling ionization processes. We…

Atomic Physics · Physics 2017-11-21 Tian-Min Yan , D. Bauer

We present an equilibrium statistical-mechanical theory of selectivity in biological ion channels. In doing so, we introduce a grand canonical ensemble for ions in a channel's selectivity filter coupled to internal and external bath…

Biological Physics · Physics 2016-05-11 D. G. Luchinsky , W. A. T. Gibby , I. Kaufman , D. A. Timucin , P. V. E. McClintock
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